Property:Description

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Property type: string

This property provides a "shortest possible" type of description, typically less than a short sentence, used for example to describe a piece of software, or a resource, or a method or anything else really.

It should be used as such:

<page name> is (a/an/the/...) [[description::as little text as possible]].

 e.g:

 HMMER is a [[description::software package for working with profile hidden Markov models (HMM)]].

Note that neither "page title", nor "is a", nor the full stop character are part of the description, much like Debian package descriptions.

The intended benefit for using this property would be within dynamically generated tables, where it will typically appear as short "description" column.

Showing 479 pages using this property.
A
density-functional theory code  +
A parallel assembler for short read sequence data  +
efficient mathematics library  +
A parallel assembler for short read sequence data  +
Functional annotation of genetic variants from high-throughput sequencing data  +
large modeling suite  +
ANSYS workshop: Using HPC and Reduced Order Models for ANSYS simulations  +
tool for accessing the Grid resources  +
framework for setting up and analyzing atomistic simulations  +
Alignment tool for SOLiD transcript reads  +
finite-element package  +
capability resource of 153 TFLOPS with full bisectional infiniband interconnect  +
Advanced Programming techniques for scientific computing using GPU  +
capability cluster resource of 54 TFLOPS with infiniband interconnect  +
throughput cluster resource of 40 TFLOPS  +
Learn to use Allinea’s highly scalable and easy-to-use HPC development tools  +
Learn to use Allinea’s highly scalable and easy-to-use HPC development tools  +
Allinea Performance and Debugging Tools Workshop  +
Alya performance benchmark  +
molecular dynamics  +
An introduction to UNIX/LINUX  +
An introduction to UNIX/LINUX  +
An introduction to UNIX/LINUX  +
An introduction to the UNIX/LINUX command line  +
An introduction to UNIX/LINUX  +
An introduction to the UNIX/LINUX command line  +
An introduction to UNIX/LINUX  +
An introduction to UNIX/LINUX  +
An introduction to the UNIX/LINUX command line  +
Analyzing data in an HPC environment using R  +
Introduction to using SNIC Cloud resources  +
Introduction to using SNIC Cloud resources  +
Artificial Intelligence Workshop with IBM  +
throughput/general purpose cluster resource  +
Introduction to awk and sed  +
Introduction to awk and sed  +
Introduction to awk and sed  +
Introduction to awk and sed  +
Introduction to awk and sed  +
Introduction to awk and sed  +
Introduction to awk and sed  +
Introduction to awk and sed  +
Introduction to awk and sed  +
B
BEDTools is a software suite for the comparison, manipulation and annotation of genomic features in Browser Extensible Data (BED) and General Feature Format (GFF) format  +
BILS Web Search  +
package for aligning nucleotide or amino acid sequences  +
an alignment tool like BLAST, but it is structured differently.  +
A fast light-weighted tool that aligns relatively short sequences (queries) to a sequence database (target).  +
Converts bcl files to Qseq files.  +
throughput cluster resource  +
A community effort to produce Perl code which is useful in biology.  +
A set of freely available tools for biological computation written in Python by an international team of developers.  +
information handling in biology  +
the pipeline stack that comes with the solid sequence platform  +
Set up and evaluate a local module system on Triolith for Bolin Centre software installations.  +
Bowtie is an ultrafast, memory-efficient short read aligner.  +
C
Seminar for all users at C3SE, covering software debugging on C3SE systems.  +
Seminar for all users at C3SE, describing the C3SE hardware and software environment.  +
Seminar for new users at C3SE, describing how to use our systems  +
Seminar for new users at C3SE, describing how to use our systems  +
Seminar for new users at C3SE, describing how to use our systems  +
Seminar for new users at C3SE, describing how to use our systems  +
Seminar for new users at C3SE, describing how to use our systems  +
Seminar for new users at C3SE, describing how to use our systems  +
Seminar for new users at C3SE, describing how to use our systems  +
Seminar for new users at C3SE, describing how to use our systems  +
Seminar for new users at C3SE, describing how to use our systems  +
Seminar for new users at C3SE, describing how to use our systems  +
Seminar for new users at C3SE, describing how to use our systems  +
Seminar for new users at C3SE, describing how to use our systems  +
Seminar for new users at C3SE, describing how to use our systems  +
Seminar for new users at C3SE, describing how to use our systems  +
Seminar for new users at C3SE, describing how to use our systems  +
Seminar for new users at C3SE, describing how to use our systems  +
Seminar for new users at C3SE, describing how to use our systems  +
Seminar for new users at C3SE, describing how to use our systems  +
Seminar for new users at C3SE, describing how to use our systems  +
Seminar for new users at C3SE, describing how to use our systems  +
Seminar for new users at C3SE, describing how to use our systems  +
Seminar for new users at C3SE, describing how to use our systems  +
Seminar for new users at C3SE, describing how to use our systems  +
Seminar for all users at C3SE, covering fundamental Linux skills  +
Seminar for all users at C3SE, covering the queuing system used at our systems.  +
Seminar for all users at C3SE, covering software debugging on C3SE systems.  +
C3SE Swestore storage node of 400Tb  +
Illumina's Consensus Assessment of Sequence and Variation (CASAVA) software  +
electronic structure calculation  +
data analysis  +
global climate model  +
atomistic and molecular simulations code  +
plane-wave DFT  +
de novo protein structure generation  +
Python implementation of the Connection-set Algebra (Djurfeldt 2012)  +
determining macromolecular structures by X-ray crystallography  +
atomistic and molecular simulations code  +
application of computer science methods to study the Earth's climate  +
popular multiple sequence aligner  +
Cluster architecture and job submission  +
Cluster architecture and job submission  +
Cluster architecture and job submission  +
Cluster architecture and job submission  +
Cluster architecture and job submission  +
Cluster architecture and job submission  +
Cluster architecture and job submission  +
Advanced Programming techniques for performance improvement of numerical simulation codes  +
Advanced Programming techniques for performance improvement of numerical simulation codes  +
Building a Nordic community of research software developers  +
CodeRefinery Workshop  +
Teaching researchers in sustainable software development  +
Teaching researchers in sustainable software development  +
Using commercial engineering software in an HPC environment  +
Comparing major ab initio software for materials science  +
Computational Chemistry - Enhanced Sampling MD Course at HPC2N in Umeå  +
Course: Computational Chemistry - MD Simulations (NAMD)  +
application of computer science methods to solve chemical problems  +
application of computer science methods to solve and model electromagnetic fields  +
using numerical methods to solve and analyze problems that involve fluid flows  +
applying the properties of matter to various areas of science and engineering  +
using computers to analyze and solve scientific problems  +
Ab-initio Electronic Structure Computation through LSDALTON Code  +
Commercial Mulitphysics Similation software  +
A hierarchical likelihood ratio test for phylogenetic congruence.  +
Assist researchers from Stockholm in configuring and launching the CAM5.3 global atmospheric model in a nudged configuration. Assist in installing post-processing software for converting CAM5.3 output to arl format suitable for imput into the HYSPLIT Lagrangian transport model.  +
software for macromolecular model building, model completion and validation, particularly suitable for protein modelling using X-ray data  +
Python for Scientific Computing  +
Assembles transcripts in RNA-Seq samples and calculates their abundances  +
biological macromolecule structure calculation based on NMR conformational constraints  +
D
Debugger  +
Debugging applications using DDT  +
commercial FEM package  +
plane-wave DFT  +
powerful molecular electronic structure program.  +
Parallelization of the coupled cluster complex polarization propagator module in the Dalton program  +
Data management seminar recording  +
Introduction to data handling using R tidyverse in a modern software environment  +
Debugging of HPC applications  +
Allinea Performance and Debugging Tools Workshop  +
Allinea Performance and Debugging Tools Workshop  +
Allinea Performance and Debugging Tools Workshop  +
molecular dynamics package  +
Feature request to support multi-category sea-ice in the IFS component of EC-Earth 3.  +
E
global climate model  +
Port EC-Earth to Beskow and complete performance/scaling tests.  +
Complete performance profiling of the EC-Earth model including the COSP satellite simulator.  +
A free Open Source software analysis package developed for the molecular biology.  +
A statistical test for large scale human or model organism association mapping accounting for the sample structure.  +
Exact Muffin-Tin Orbitals method, an electronic structure code based on the Green's function technique  +
Exact Muffin-Tin Orbitals method (x), an electronic structure code based on the Green's function technique  +
ENCCS/PDC VeloxChem Workshop: Quantum Chemistry from Laptop to HPC  +
molecular dynamics of soft matter systems  +
unstructured CFD solver  +
simulation environment for electromagnetic simulations  +
Electronic Structure / Seminars and discussion sessions  +
all-electron full-potential linearised augmented-plane wave (FP-LAPW) code with many advanced features  +
Parallel I/O Implementation and Communication Optimization on Xnavis Wind Farm Simulation Code  +
package to manage the systems and application software  +
Prototype system featuring 68 Nvidia Tesla K20m GPU cards and 2 Xeon Phi cards  +
Essense Code Analysis and Optimisation  +
full-potential all-electron density-functional-theory (DFT) package based on the linearized augmented plane-wave (LAPW) method  +
F
package for aligning nucleotide or amino acid sequences  +
A collection of command line tools for Short-Reads FASTA/FASTQ files preprocessing.  +
a real-space full multiple scattering (RSFMS) Green's function method  +
Freely available high performance library to perform fast Fourier transformations  +
Aims to provide a simple way to do some quality control checks on raw sequence data coming from high throughput sequencing pipelines.  +
throughput cluster resource of 58 TFLOPS  +
Easy access to safe and reliable hosting and computation for Swedish bioinformatics.  +
commercial computational fluid dynamics package  +
commercial computational fluid dynamics package  +
Bayesian SNP and short indel caller from the Marth lab (who created Mosaik).  +
G
ab initio quantum chemistry  +
Performs heuristic phylogenetic searches ...  +
Structured software library for writing analysis tools for next-generation sequencing data.  +
A tool for Genome-wide Complex Trait Analysis  +
plasma microturbulence code  +
compiler collection for a number of languages including C, C++ and Fortran  +
real-space DFT  +
use of graphics processing units (GPU or simply "graphics cards") in scientific computation  +
versatile package for molecular dynamics  +
widely used quantum chemistry software  +
Gaussian Workshop at HPC2N in Umeå  +
throughput cluster resource  +
portable command-line driven graphing utility  +
WYSIWYG tool to make two-dimensional plots of scientific data  +
cluster resource primarily used for SweGrid  +
electronic structure codes based on the KKRASA Green's function technique  +
combines computers from multiple administrative domains  +
H
package for working with profile hidden Markov models (HMM)  +
HPC Tools for the Modern Era  +
offering training and education to the SNIC communities in HPC related matters.  +
HPC2N Swestore storage node of 400Tb  +
Performance Analysis and Parallelisation of SMHI's HYPE Code  +
shared-memory computer with 64 cores and 2 TB of memory  +
throughput cluster resource  +
Heterogeneous computing with performance modelling  +
Hierarchical modules and software selection  +
Hierarchical modules and software selection  +
Hierarchical modules and software selection  +
is a graphical user-interface for macromolecular phasing  +
How to work effectively on Tetralith  +
I
Assist researchers from Göteborg in including parallel NetCDF IO support and the COSP module in the OpenIFS model  +
Enabling support as part of the Prace DECI 8 program  +
Improving the MPI collective performance by network aware communication  +
European network of distributed e-infrastructure to support Earth system modelling.  +
memory error and thread checker  +
Replace the atmospheric component of EC-Earth (IFS) with the OpenIFS model (c38r1).  +
Intel Cluster Studio/HPC Training at HPC2N  +
Using the Intel® compiler and performance tools  +
MPI library  +
compilers for C, C++ and Fortran  +
Intel development / HPC tools  +
Intel oneAPI Overview Webinar  +
Introduction to Distributed Memory Programming and MPI  +
Introduction to GPU programming with CUDA  +
Introduction to GPU programming: When and how to use GPU-acceleration?  +
Introduction to HPC at HPC2N  +
Introduction course for new users of high performance computing  +
Introduction course for new users of high performance computing  +
Introduction course for new users of high performance computing  +
Introduction course for new users of high performance computing  +
Introduction to HPC and Kebnekaise  +
Introduction to HPC2N  +
Introduction to HPC2N  +
Introduction to HPC2N  +
Introduction course for (new) users of HPC2N's systems  +
Introduction to HPC2N  +
Introduction to HPC2N  +
Introduction to HPC2N and Kebnekaise  +
Introduction to HPC2N and Kebnekaise  +
Introduction to Kebnekaise  +
Introduction to Linux and Abisko  +
Introduction to Linux and Abisko  +
Introduction to NSC  +
Introduction to NSC  +
Introduction to PDC  +
Introduction to PDC  +
Introduction to PDC  +
Introduction to PDC  +
Introduction to PDC  +
Introduction to PDC  +
Introduction to PDC  +
Introduction to PDC  +
Introduction to PDC  +
Introduction to PDC  +
Introduction to Intel's Xeon Phi processor for scientific computing  +
Introduction to Shared Memory Programming and OpenMP  +
Introduction to WIEN2k  +
Course: Introduction to OpenMP and MPI at HPC2N in Umeå  +
J
ab initio quantum mechanics  +
K
cluster resource of about 21 TFLOPS  +
throughput cluster resource of 26 TFLOPS  +
L
classical molecular dynamics code  +
Parallelization of a Large Eddy Simulation Code  +
An introduction to the LUNARC HPC Desktop  +
An introduction to the LUNARC HPC Desktop  +
LUNARC Swestore storage node of 400Tb  +
Cray XE6 capability cluster with 305 TFLOPS peak performance  +
SNIC Science Cloud Workshop  +
M
Speeding up MATLAB Computations using SNIC Clusters  +
Speeding up MATLAB Computations using SNIC Clusters  +
Speeding up MATLAB Computations using SNIC Clusters  +
Speeding up MATLAB Computations using SNIC Clusters  +
Computational Chemistry - MD Simulations in Umeå  +
Computational Chemistry - MD/CHARMM course in Umeå  +
Updating the automated classification system for MDR proteins based on new data.  +
Complete performance profiling of the MISU MIT Cloud and Aerosol (MIMICA) LES model.  +
efficient mathematics library  +
display ab initio molecular densities  +
An introduction to parallel programming using MPI  +
An introduction to parallel programming using MPI  +
An introduction to parallel programming using MPI  +
An introduction to parallel programming using MPI  +
An introduction to parallel programming using MPI  +
An introduction to parallel programming using MPI  +
An introduction to parallel programming using MPI  +
Writing parallel applications using MPI  +
Writing parallel applications using MPI  +
Writing parallel applications using MPI  +
ab initio quantum chemistry  +
Finite Element Analysis (FEA) solver  +
C++ library for interprocess communication in large scale neuronal network simulations  +
MPI library  +
multiple sequence alignment program  +
computational software for technical computing  +
programming language with extensive plotting and graphics functionalities  +
Parallel Computing in MATLAB and Scaling to SNIC HPC Clusters  +
Parallel Computing in MATLAB and Scaling to SNIC HPC Clusters  +
MATLAB Programming Techniques  +
Parallel Computing in MATLAB and Scaling to SNIC HPC Clusters  +
Parallel Computing in MATLAB and Scaling to SNIC HPC Clusters  +
Parallel Computing in MATLAB and Scaling to SNIC HPC Clusters  +
Efficient use of Matlab in an HPC environment  +
cluster resource of 37 TFLOPS dedicated to materials science  +
finite-difference time-domain simulation software package  +
Newtonian motion simulation in systems with hundreds to millions of particles  +
software for molecular dynamic, Monte Carlo, and Brownian dynamics simulation  +
Bayesian estimation of phylogeny  +
fast, high-quality multiple sequence alignment  +
N
parallel molecular dynamics code  +
climate model diagnostics  +
analysis and visualization  +
data analysis  +
NEC SX-Aurora TSUBASA Webinar  +
NMR spectroscopy data analysis suite  +
GPU/Accelerator Pilot Project at NSC  +
Introduction to using NSC resources  +
NSC Swestore storage node of 200Tb  +
NVIDIA GPU Boot Camp and Deep Learning workshop  +
Boundary conditions for Nek5000  +
Nek5000 with OpenACC  +
capability cluster resource of 60 TFLOPS with full bisection infiniband interconnect  +
organization of neuroscience data  +
global climate model  +
Complete performance profiling of the Norwegian Earth System Model (NorESM) on Triolith.  +
NeIC climate and environment collaborative project.  +
the fundamental package needed for scientific computing with Python  +
O
numerical computation and visualisation language  +
time dependent density-functional theory code  +
Overview page on online training materials freely available  +
open source [[MPI]] library  +
free, open source CFD software package by OpenCFD Ltd  +
An introduction to shared memory parallel programming using OpenMP  +
An introduction to shared memory parallel programming using OpenMP  +
An introduction to shared memory parallel programming using OpenMP  +
density-functional theory code  +
Serial optimization of a cloud parcel model for embedding in a the ECHAM-HAM global climate model.  +
P
visualization suite for VASP  +
PDC Swestore storage node of 200Tb  +
Introduction to GROMACS Workshop  +
PDC/PRACE Online Course: Writing Parallel Applications Using MPI  +
compiler suite  +
package for inference of phylogenies  +
render high-quality images of three dimensional objects  +
Network topology analysis and efficient collective design and  +
PRACE/BioExcel Seasonal School: HPC for Life Sciences  +
Performance improvement of the SPME in Molsim  +
Parallel I/O Implementation on the Multiple Sequence Alignment Software ClustalW-MPI  +
Training in parallel programming  +
An introduction to shared memory parallel programming using OpenMP  +
Parallel Programming seminar provided by PDC, PGI and NVIDIA  +
programming with multiple threads or processes  +
Parallelization request for a materials science code  +
Patchwork: Bioinformatic tool for allele-specific copynumber analysis of tumor samples  +
compiler suite  +
Web hosting for PconsC  +
The Pencil Code is a high-order finite-difference code for compressible hydrodynamic flows with magnetic fields  +
Performance Analysis of ad_OSS Program for Modeling Water Molecules  +
Application Benchmark of NEMO Oceanography Code on CURIE Tier-0 System  +
Performance Tools (Paraver, Extrae, Scalasca) Course  +
improving the computational efficiency of an application  +
optimisation of simulation applications with respect to an optimal use of hardware features.  +
Petascaling of high resolution EC-EARTH on PRACE Tier-0 Curie System  +
is a software suite for the automated determination of macromolecular structures using X-ray crystallography and other methods  +
throughput cluster resource of 26 TFLOPS  +
Porting and performance analysis of earth system models (ESM) on different architectures  +
Port three commonly used Earth system models to triolith.  +
commercial computational fluid dynamics package  +
is a molecular visualization system.  +
Q
DFT based electronic structure modeling codes  +
R
R +
statistical computing and visualisation language.  +
all-electron full-potential linearised muffin-tin orbital (FP-LMTO) code with many features. Dynamic mean field capabilities is included in the code.  +
Advanced Topics in R: Reproducible Research  +
Making your research data fit for a future of open science and open data  +
Making your research data fit for a future of open science and open data  +
protein structure prediction suite  +
dynamic, reflective, general-purpose object-oriented programming language  +
Running MD applications efficiently in HPC  +
Solving large problems efficiently through parallel computing in Matlab  +
S
hidden Markov model analysis of biological sequences  +
density-functional theory code for very large systems  +
Coordinating new and emerging technologies within SNIC.  +
SNIC Science Cloud is a cloud computing infrastructure run by SNIC.  +
Introduction seminar and workshop to SNIC Cloud resources  +
Material for technical training and workshops hosted by SNIC Science Cloud.  +
SNIC coordinated training  +
SNIC Cloud Computing Workshop  +
commercial computational fluid dynamics package  +
wrap fast libraries for use in high level languages  +
Performance profiler for parallel applications  +
Schrödinger Molecular Modelling / Drug Discovery Workshop  +
Workshop on using the Schrödinger materials science suite with Quantum Espresso  +
open-source software for mathematics, science, and engineering.  +
Scientific Visualisation Workshop  +
Scientific Visualisation Workshop 2014  +
Scientific Visualisation Workshop 2014  +
Scientific Visualisation Workshop Autumn 2016  +
is a computer program based on Shake-and-Bake, a dual-space direct-methods procedure for determining crystal structures from X-ray diffraction data.  +
An introduction to shared memory parallel programming using OpenMP  +
Shared memory parallel programming using OpenMP  +
is a set of programs for the determination of small (SM) and macromolecular (MM) crystal structures by single crystal X-ray and neutron diffraction.  +
package for solving the Navier-Stokes equations for incompressible channel and boundary layer flows  +
throughput resource for SweGrid  +
A knowledgebase of user oriented information in Swedish academic high performance computing.  +
Software Carpentry workshop  +
Software Carpentry workshop  +
Software Carpentry Workshop  +
Software Carpentry Workshop in R  +
application of computer science methods to solve continuum solid mechanics problems  +
commercial computational fluid dynamics package  +
structural and functional analysis of proteins and their biomolecular complexes  +
Synthetic Benchmark for PRACE Tier-0 Curie System  +
T
profiling and tracing tool-kit for performance analysis of parallel programs  +
Task-based parallelism in scientific computing  +
Task-based parallelism in scientific computing  +
Configure a coupled, single column model version of EC-Earth3 (OpenIFS, oasis3-mct, nemo3.6)  +
Tensorflow and Deep Learning  +
Test suite for VASP  +
parallel performance optimization tools  +
parallel performance optimization tools  +
The Effective Use of the Kebnekaise Accelerators  +
4 node 8 GPU evaluation system  +
Introduction to awk and sed  +
source code defect analysis tool  +
MPI job analyser tool  +
Transfering data to and from an HPC system  +
Transfering data to and from an HPC system  +
Transfering data to and from an HPC system  +
Capability cluster with 338 TFLOPS peak and 1:2 Infiniband fat-tree  +
U
UPPMAX Swestore storage node of 200Tb  +
Introduction to Unix for new users of HPC  +
Introduction course for new users of Uppmax systems  +
Introduction course for new users of Uppmax systems  +
Introduction course for new users of Uppmax systems  +
Introduction course for new users of Uppmax systems  +
Introduction course for new users of Uppmax systems  +
Introduction course for new users of Uppmax systems  +
Introduction course for new users of Uppmax systems  +
Introduction course for new users of Uppmax systems  +
Introduction course for new users of Uppmax systems  +
Introduction course for new users of Uppmax systems  +
Introduction course for new users of Uppmax systems  +
Introduction course for new users of Uppmax systems  +
Introduction course for new users of Uppmax systems  +
Using Matlab in an HPC environment  +
Using Matlab in an HPC environment  +
Using Matlab in an HPC environment  +
Using Matlab in an HPC environment  +
Speeding up code modernisation and bug resolution with Allinea DDT  +
Utilising a modern HPC environment  +
V
electronic structure calculation  +
Seminar on running VASP efficiently at Triolith and Beskow (the new Cray XC-40 at PDC)  +
Seminar on running VASP efficiently at Triolith and Beskow (the new Cray XC-40 at PDC)  +
VASP best practices workshop  +
visualise and analyse large biomolecular systems  +
threading and performance optimization tool  +
Visualization and Analysis Platform for Ocean, Atmosphere, and Solar Researchers  +
Vasp - Basic Theory and Best Practices  +
Version Control Workshop  +
software for graphical representation of data  +
Visualisation and interactivity in HPC - The LUNARC HPC Desktop  +
W
DFT program package based on the full-potential (linearized) augmented plane wave + local orbitals method  +
Working effectively with HPC systems  +
Introduction to working with Python at NSC  +
X
Using Cray XC-40 Machines  +
X-ray Detector Software for processing single-crystal monochromatic diffraction data recorded by the rotation method.  +
Y
many-body calculations in solid state and molecular physics  +
Z
GPU cluster  +