Search by property

This page provides a simple browsing interface for finding entities described by a property and a named value. Other available search interfaces include the page property search, and the ask query builder.

List of results

• Category:Performance optimisation  + (improving the computational efficiency of an application)
• Category:Bioinformatics  + (information handling in biology)
• Shake n bake  + (is a computer program based on Shake-and-Bake, a dual-space direct-methods procedure for determining crystal structures from X-ray diffraction data.)
• Hkl2map  + (is a graphical user-interface for macromolecular phasing)
• Pymol  + (is a molecular visualization system.)
• Shelx  + (is a set of programs for the determination of small (SM) and macromolecular (MM) crystal structures by single crystal X-ray and neutron diffraction.)
• Phenix  + (is a software suite for the automated determination of macromolecular structures using X-ray crystallography and other methods)
• ANSYS  + (large modeling suite)
• Yambo  + (many-body calculations in solid state and molecular physics)
• Inspector  + (memory error and thread checker)
• Amber  + (molecular dynamics)
• ESPResSo  + (molecular dynamics of soft matter systems)
• Desmond  + (molecular dynamics package)
• Mafft  + (multiple sequence alignment program)
• Octave  + (numerical computation and visualisation language)
• Category:HPC training  + (offering training and education to the SNIC communities in HPC related matters.)
• Open MPI  + (open source [[MPI]] library)
• SciPy  + (open-source software for mathematics, science, and engineering.)
• Category:Performance tuning  + (optimisation of simulation applications with respect to an optimal use of hardware features.)
• Category:Neuroinformatics  + (organization of neuroscience data)
• FASTA  + (package for aligning nucleotide or amino acid sequences)
• BLAST  + (package for aligning nucleotide or amino acid sequences)
• PHYLIP  + (package for inference of phylogenies)
• Simson  + (package for solving the Navier-Stokes equations for incompressible channel and boundary layer flows)
• HMMER  + (package for working with profile hidden Markov models (HMM))

• Environment modules  + (package to manage the systems and application software)

• NAMD  + (parallel molecular dynamics code)
• Test training 2014  + (parallel performance optimization tools)
• Test training 2012  + (parallel performance optimization tools)
• CPMD  + (plane-wave DFT)
• Dacapo  + (plane-wave DFT)
• GENE  + (plasma microturbulence code)
• ClustalW  + (popular multiple sequence aligner)
• Gnuplot  + (portable command-line driven graphing utility)
• Dalton  + (powerful molecular electronic structure program.)
• TAU  + (profiling and tracing tool-kit for performance analysis of parallel programs)
• Matlab  + (programming language with extensive plotting and graphics functionalities)
• Category:Parallel programming  + (programming with multiple threads or processes)
• Rosetta  + (protein structure prediction suite)
• GPAW  + (real-space DFT)
• POV-Ray  + (render high-quality images of three dimensional objects)
• Halvan  + (shared-memory computer with 64 cores and 2 TB of memory)
• Efield  + (simulation environment for electromagnetic simulations)
• Category:Visualisation  + (software for graphical representation of data)
• Coot  + (software for macromolecular model building, model completion and validation, particularly suitable for protein modelling using X-ray data)
• Molsim  + (software for molecular dynamic, Monte Carlo, and Brownian dynamics simulation)
• Totalview  + (source code defect analysis tool)
• R  + (statistical computing and visualisation language.)
• Category:Structural biology  + (structural and functional analysis of proteins and their biomolecular complexes)
• NumPy  + (the fundamental package needed for scientific computing with Python)
• Bioscope  + (the pipeline stack that comes with the solid sequence platform)