Property:Description

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Property type: string

This property provides a "shortest possible" type of description, typically less than a short sentence, used for example to describe a piece of software, or a resource, or a method or anything else really.

It should be used as such:

<page name> is (a/an/the/...) [[description::as little text as possible]].

 e.g:

 HMMER is a [[description::software package for working with profile hidden Markov models (HMM)]].

Note that neither "page title", nor "is a", nor the full stop character are part of the description, much like Debian package descriptions.

The intended benefit for using this property would be within dynamically generated tables, where it will typically appear as short "description" column.

Showing 250 pages using this property.
A
density-functional theory code  +
A parallel assembler for short read sequence data  +
efficient mathematics library  +
A parallel assembler for short read sequence data  +
Functional annotation of genetic variants from high-throughput sequencing data  +
large modeling suite  +
ANSYS workshop: Using HPC and Reduced Order Models for ANSYS simulations  +
tool for accessing the Grid resources  +
framework for setting up and analyzing atomistic simulations  +
Alignment tool for SOLiD transcript reads  +
finite-element package  +
capability resource of 153 TFLOPS with full bisectional infiniband interconnect  +
Advanced Programming techniques for scientific computing using GPU  +
capability cluster resource of 54 TFLOPS with infiniband interconnect  +
throughput cluster resource of 40 TFLOPS  +
Learn to use Allinea’s highly scalable and easy-to-use HPC development tools  +
Learn to use Allinea’s highly scalable and easy-to-use HPC development tools  +
Allinea Performance and Debugging Tools Workshop  +
Alya performance benchmark  +
molecular dynamics  +
An introduction to UNIX/LINUX  +
An introduction to UNIX/LINUX  +
An introduction to UNIX/LINUX  +
An introduction to the UNIX/LINUX command line  +
An introduction to UNIX/LINUX  +
An introduction to the UNIX/LINUX command line  +
An introduction to UNIX/LINUX  +
An introduction to UNIX/LINUX  +
An introduction to the UNIX/LINUX command line  +
Analyzing data in an HPC environment using R  +
Introduction to using SNIC Cloud resources  +
Introduction to using SNIC Cloud resources  +
Artificial Intelligence Workshop with IBM  +
throughput/general purpose cluster resource  +
Introduction to awk and sed  +
Introduction to awk and sed  +
Introduction to awk and sed  +
Introduction to awk and sed  +
Introduction to awk and sed  +
Introduction to awk and sed  +
Introduction to awk and sed  +
Introduction to awk and sed  +
Introduction to awk and sed  +
B
BEDTools is a software suite for the comparison, manipulation and annotation of genomic features in Browser Extensible Data (BED) and General Feature Format (GFF) format  +
BILS Web Search  +
package for aligning nucleotide or amino acid sequences  +
an alignment tool like BLAST, but it is structured differently.  +
A fast light-weighted tool that aligns relatively short sequences (queries) to a sequence database (target).  +
Converts bcl files to Qseq files.  +
throughput cluster resource  +
A community effort to produce Perl code which is useful in biology.  +
A set of freely available tools for biological computation written in Python by an international team of developers.  +
information handling in biology  +
the pipeline stack that comes with the solid sequence platform  +
Set up and evaluate a local module system on Triolith for Bolin Centre software installations.  +
Bowtie is an ultrafast, memory-efficient short read aligner.  +
C
Seminar for all users at C3SE, covering software debugging on C3SE systems.  +
Seminar for all users at C3SE, describing the C3SE hardware and software environment.  +
Seminar for new users at C3SE, describing how to use our systems  +
Seminar for new users at C3SE, describing how to use our systems  +
Seminar for new users at C3SE, describing how to use our systems  +
Seminar for new users at C3SE, describing how to use our systems  +
Seminar for new users at C3SE, describing how to use our systems  +
Seminar for new users at C3SE, describing how to use our systems  +
Seminar for new users at C3SE, describing how to use our systems  +
Seminar for new users at C3SE, describing how to use our systems  +
Seminar for new users at C3SE, describing how to use our systems  +
Seminar for new users at C3SE, describing how to use our systems  +
Seminar for new users at C3SE, describing how to use our systems  +
Seminar for new users at C3SE, describing how to use our systems  +
Seminar for new users at C3SE, describing how to use our systems  +
Seminar for new users at C3SE, describing how to use our systems  +
Seminar for new users at C3SE, describing how to use our systems  +
Seminar for new users at C3SE, describing how to use our systems  +
Seminar for new users at C3SE, describing how to use our systems  +
Seminar for new users at C3SE, describing how to use our systems  +
Seminar for new users at C3SE, describing how to use our systems  +
Seminar for new users at C3SE, describing how to use our systems  +
Seminar for new users at C3SE, describing how to use our systems  +
Seminar for new users at C3SE, describing how to use our systems  +
Seminar for new users at C3SE, describing how to use our systems  +
Seminar for all users at C3SE, covering fundamental Linux skills  +
Seminar for all users at C3SE, covering the queuing system used at our systems.  +
Seminar for all users at C3SE, covering software debugging on C3SE systems.  +
C3SE Swestore storage node of 400Tb  +
Illumina's Consensus Assessment of Sequence and Variation (CASAVA) software  +
electronic structure calculation  +
data analysis  +
global climate model  +
atomistic and molecular simulations code  +
plane-wave DFT  +
de novo protein structure generation  +
Python implementation of the Connection-set Algebra (Djurfeldt 2012)  +
determining macromolecular structures by X-ray crystallography  +
atomistic and molecular simulations code  +
application of computer science methods to study the Earth's climate  +
popular multiple sequence aligner  +
Cluster architecture and job submission  +
Cluster architecture and job submission  +
Cluster architecture and job submission  +
Cluster architecture and job submission  +
Cluster architecture and job submission  +
Cluster architecture and job submission  +
Cluster architecture and job submission  +
Advanced Programming techniques for performance improvement of numerical simulation codes  +
Advanced Programming techniques for performance improvement of numerical simulation codes  +
Building a Nordic community of research software developers  +
CodeRefinery Workshop  +
Teaching researchers in sustainable software development  +
Teaching researchers in sustainable software development  +
Using commercial engineering software in an HPC environment  +
Comparing major ab initio software for materials science  +
Computational Chemistry - Enhanced Sampling MD Course at HPC2N in Umeå  +
Course: Computational Chemistry - MD Simulations (NAMD)  +
application of computer science methods to solve chemical problems  +
application of computer science methods to solve and model electromagnetic fields  +
using numerical methods to solve and analyze problems that involve fluid flows  +
applying the properties of matter to various areas of science and engineering  +
using computers to analyze and solve scientific problems  +
Ab-initio Electronic Structure Computation through LSDALTON Code  +
Commercial Mulitphysics Similation software  +
A hierarchical likelihood ratio test for phylogenetic congruence.  +
Assist researchers from Stockholm in configuring and launching the CAM5.3 global atmospheric model in a nudged configuration. Assist in installing post-processing software for converting CAM5.3 output to arl format suitable for imput into the HYSPLIT Lagrangian transport model.  +
software for macromolecular model building, model completion and validation, particularly suitable for protein modelling using X-ray data  +
Python for Scientific Computing  +
Assembles transcripts in RNA-Seq samples and calculates their abundances  +
biological macromolecule structure calculation based on NMR conformational constraints  +
D
Debugger  +
Debugging applications using DDT  +
commercial FEM package  +
plane-wave DFT  +
powerful molecular electronic structure program.  +
Parallelization of the coupled cluster complex polarization propagator module in the Dalton program  +
Data management seminar recording  +
Introduction to data handling using R tidyverse in a modern software environment  +
Debugging of HPC applications  +
Allinea Performance and Debugging Tools Workshop  +
Allinea Performance and Debugging Tools Workshop  +
Allinea Performance and Debugging Tools Workshop  +
molecular dynamics package  +
Feature request to support multi-category sea-ice in the IFS component of EC-Earth 3.  +
E
global climate model  +
Port EC-Earth to Beskow and complete performance/scaling tests.  +
Complete performance profiling of the EC-Earth model including the COSP satellite simulator.  +
A free Open Source software analysis package developed for the molecular biology.  +
A statistical test for large scale human or model organism association mapping accounting for the sample structure.  +
Exact Muffin-Tin Orbitals method, an electronic structure code based on the Green's function technique  +
Exact Muffin-Tin Orbitals method (x), an electronic structure code based on the Green's function technique  +
ENCCS/PDC VeloxChem Workshop: Quantum Chemistry from Laptop to HPC  +
molecular dynamics of soft matter systems  +
unstructured CFD solver  +
simulation environment for electromagnetic simulations  +
Electronic Structure / Seminars and discussion sessions  +
all-electron full-potential linearised augmented-plane wave (FP-LAPW) code with many advanced features  +
Parallel I/O Implementation and Communication Optimization on Xnavis Wind Farm Simulation Code  +
package to manage the systems and application software  +
Prototype system featuring 68 Nvidia Tesla K20m GPU cards and 2 Xeon Phi cards  +
Essense Code Analysis and Optimisation  +
full-potential all-electron density-functional-theory (DFT) package based on the linearized augmented plane-wave (LAPW) method  +
F
package for aligning nucleotide or amino acid sequences  +
A collection of command line tools for Short-Reads FASTA/FASTQ files preprocessing.  +
a real-space full multiple scattering (RSFMS) Green's function method  +
Freely available high performance library to perform fast Fourier transformations  +
Aims to provide a simple way to do some quality control checks on raw sequence data coming from high throughput sequencing pipelines.  +
throughput cluster resource of 58 TFLOPS  +
Easy access to safe and reliable hosting and computation for Swedish bioinformatics.  +
commercial computational fluid dynamics package  +
commercial computational fluid dynamics package  +
Bayesian SNP and short indel caller from the Marth lab (who created Mosaik).  +
G
ab initio quantum chemistry  +
Performs heuristic phylogenetic searches ...  +
Structured software library for writing analysis tools for next-generation sequencing data.  +
A tool for Genome-wide Complex Trait Analysis  +
plasma microturbulence code  +
compiler collection for a number of languages including C, C++ and Fortran  +
real-space DFT  +
use of graphics processing units (GPU or simply "graphics cards") in scientific computation  +
versatile package for molecular dynamics  +
widely used quantum chemistry software  +
Gaussian Workshop at HPC2N in Umeå  +
throughput cluster resource  +
portable command-line driven graphing utility  +
WYSIWYG tool to make two-dimensional plots of scientific data  +
cluster resource primarily used for SweGrid  +
electronic structure codes based on the KKRASA Green's function technique  +
combines computers from multiple administrative domains  +
H
package for working with profile hidden Markov models (HMM)  +
HPC Tools for the Modern Era  +
offering training and education to the SNIC communities in HPC related matters.  +
HPC2N Swestore storage node of 400Tb  +
Performance Analysis and Parallelisation of SMHI's HYPE Code  +
shared-memory computer with 64 cores and 2 TB of memory  +
throughput cluster resource  +
Heterogeneous computing with performance modelling  +
Hierarchical modules and software selection  +
Hierarchical modules and software selection  +
Hierarchical modules and software selection  +
is a graphical user-interface for macromolecular phasing  +
How to work effectively on Tetralith  +
I
Assist researchers from Göteborg in including parallel NetCDF IO support and the COSP module in the OpenIFS model  +
Enabling support as part of the Prace DECI 8 program  +
Improving the MPI collective performance by network aware communication  +
European network of distributed e-infrastructure to support Earth system modelling.  +
memory error and thread checker  +
Replace the atmospheric component of EC-Earth (IFS) with the OpenIFS model (c38r1).  +
Intel Cluster Studio/HPC Training at HPC2N  +
Using the Intel® compiler and performance tools  +
MPI library  +
compilers for C, C++ and Fortran  +
Intel development / HPC tools  +
Intel oneAPI Overview Webinar  +
Introduction to Distributed Memory Programming and MPI  +
Introduction to GPU programming with CUDA  +
Introduction to GPU programming: When and how to use GPU-acceleration?  +
Introduction to HPC at HPC2N  +
Introduction course for new users of high performance computing  +
Introduction course for new users of high performance computing  +
Introduction course for new users of high performance computing  +
Introduction course for new users of high performance computing  +
Introduction to HPC and Kebnekaise  +
Introduction to HPC2N  +
Introduction to HPC2N  +
Introduction to HPC2N  +
Introduction course for (new) users of HPC2N's systems  +
Introduction to HPC2N  +
Introduction to HPC2N  +
Introduction to HPC2N and Kebnekaise  +
Introduction to HPC2N and Kebnekaise  +
Introduction to Kebnekaise  +
Introduction to Linux and Abisko  +
Introduction to Linux and Abisko  +
Introduction to NSC  +
Introduction to NSC  +
Introduction to PDC  +
Introduction to PDC  +
Introduction to PDC  +
Introduction to PDC  +
Introduction to PDC  +
Introduction to PDC  +