User contributions
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- 21:19, 1 September 2014 (diff | hist) . . (-18) . . m User:Samuel Lampa (UPPMAX) (Removed picture.)
- 08:44, 10 September 2013 (diff | hist) . . (-7) . . User:Samuel Lampa (UPPMAX)
- 08:43, 10 September 2013 (diff | hist) . . (+135) . . User:Samuel Lampa (UPPMAX) (→Expertise)
- 08:41, 10 September 2013 (diff | hist) . . (+28) . . User:Samuel Lampa (UPPMAX)
- 09:38, 27 April 2012 (diff | hist) . . (-33) . . m User:Samuel Lampa (UPPMAX)
- 09:37, 27 April 2012 (diff | hist) . . (-38) . . m User:Samuel Lampa (UPPMAX) (→Quick facts)
- 09:35, 27 April 2012 (diff | hist) . . (+23) . . User:Samuel Lampa (UPPMAX) (→Expertise: Added iRODS as expertise)
- 09:34, 27 April 2012 (diff | hist) . . (0) . . m Swestore-dCache (→Unified environment)
- 09:33, 27 April 2012 (diff | hist) . . (+100) . . Swestore-dCache (Various adjusments)
- 08:55, 27 April 2012 (diff | hist) . . (+94) . . Swestore-dCache (→National storage: Link to Swestore usage monitoring)
- 08:53, 27 April 2012 (diff | hist) . . (0) . . m Swestore-dCache (→Example of storage project)
- 08:52, 27 April 2012 (diff | hist) . . (+96) . . m Swestore-dCache (→Example of storage project: Added UPPNEX)
- 08:50, 27 April 2012 (diff | hist) . . (+8) . . Swestore-dCache
- 12:15, 17 October 2011 (diff | hist) . . (+1,582) . . N GCTA (Created page with "__NOTOC__ {{software info |description=A tool for Genome-wide Complex Trait Analysis |license=? |fields=Bioinformatics }} [http://gump.qimr.edu.au/gcta/index.html GCTA] (Genome-...") (current)
- 12:13, 17 October 2011 (diff | hist) . . (+789) . . N GATK (Created page with "__NOTOC__ {{software info |description=Structured software library for writing analysis tools for next-generation sequencing data. |license=free |fields=Bioinformatics }} [http:...") (current)
- 12:12, 17 October 2011 (diff | hist) . . (+709) . . N GARLI (Created page with "__NOTOC__ {{software info |description=Performs heuristic phylogenetic searches ... |license=? |fields=Bioinformatics }} [https://www.nescent.org/wg_garli/Main_Page GARLI] perfor...") (current)
- 12:11, 17 October 2011 (diff | hist) . . (+653) . . N FreeBayes (Created page with "__NOTOC__ {{software info |description=Bayesian SNP and short indel caller from the Marth lab (who created Mosaik). |license=? |fields=Bioinformatics }} [https://github.com/ekg/...") (current)
- 12:08, 17 October 2011 (diff | hist) . . (+738) . . N FastQC (Created page with "__NOTOC__ {{software info |description=Aims to provide a simple way to do some quality control checks on raw sequence data coming from high throughput sequencing pipelines. |lic...") (current)
- 12:06, 17 October 2011 (diff | hist) . . (+645) . . N FASTX (Created page with "__NOTOC__ {{software info |description=A collection of command line tools for Short-Reads FASTA/FASTQ files preprocessing. |license=free |fields=Bioinformatics }} The [http://han...") (current)
- 12:03, 17 October 2011 (diff | hist) . . (+661) . . N EMMAX (Created page with "__NOTOC__ {{software info |description=A statistical test for large scale human or model organism association mapping accounting for the sample structure. |license=? |fields=Bio...") (current)
- 12:02, 17 October 2011 (diff | hist) . . (+609) . . N EMBOSS (Created page with "__NOTOC__ {{software info |description=A free Open Source software analysis package developed for the molecular biology. |license=free |fields=Bioinformatics }} [http://www.ncbi...") (current)
- 12:01, 17 October 2011 (diff | hist) . . (+692) . . N Cufflinks (Created page with "__NOTOC__ {{software info |description=Assembles transcripts in RNA-Seq samples and calculates their abundances |license=free |fields=Bioinformatics }} [http://cufflinks.cbcb.umd...") (current)
- 11:59, 17 October 2011 (diff | hist) . . (+746) . . N Concaterpillar (Created page with "__NOTOC__ {{software info |description=A hierarchical likelihood ratio test for phylogenetic congruence. |license=free |fields=Bioinformatics }} [http://rogerlab.biochemistryand...") (current)
- 11:56, 17 October 2011 (diff | hist) . . (-11) . . m CASAVA (current)
- 11:55, 17 October 2011 (diff | hist) . . (+706) . . N CASAVA (Created page with "__NOTOC__ {{software info |description=Illumina's Consensus Assessment of Sequence and Variation (CASAVA) software |license=site-license |fields=Bioinformatics }} [http://www.il...")
- 11:52, 17 October 2011 (diff | hist) . . (+572) . . N Bowtie (Created page with "__NOTOC__ {{software info |description=Bowtie is an ultrafast, memory-efficient short read aligner. |license=free |fields=Bioinformatics }} [http://bowtie-bio.sourceforge.net/in...") (current)
- 12:15, 4 October 2011 (diff | hist) . . (+147) . . m Accessing Swestore with davfs2 (→More Hints)
- 12:14, 4 October 2011 (diff | hist) . . (+511) . . m Accessing Swestore with davfs2
- 15:16, 30 September 2011 (diff | hist) . . (+397) . . Accessing Swestore with davfs2
- 08:49, 30 September 2011 (diff | hist) . . (+143) . . N User talk:Samuel Lampa (UPPMAX) (Created page with "Hi, you can leave me a message on this page! --~~~~ == Talk ==") (current)
- 08:43, 30 September 2011 (diff | hist) . . (+27) . . m Bioscope (→Tips and tricks) (current)
- 08:43, 30 September 2011 (diff | hist) . . (+2,201) . . N Bioscope (Created page with "__NOTOC__ {{software info |description=the pipeline stack that comes with the solid sequence platform |license=site license |fields=bioinformatics }} SOLiD [http://solidsoftware...")
- 08:39, 30 September 2011 (diff | hist) . . (+553) . . N BioPython (Created page with "__NOTOC__ {{software info |description=A set of freely available tools for biological computation written in Python by an international team of developers. |license=free |fields=...") (current)
- 08:37, 30 September 2011 (diff | hist) . . (-57) . . m BioPerl (current)
- 08:37, 30 September 2011 (diff | hist) . . (+636) . . N BioPerl (Created page with "__NOTOC__ {{software info |description=A community effort to produce Perl code which is useful in biology. |license=free |fields=semicolon separated list of field category names ...")
- 08:35, 30 September 2011 (diff | hist) . . (+438) . . N BclConverter (Created page with "__NOTOC__ {{software info |description=Converts bcl files to Qseq files. |license=free |fields=bioinformatics }} [http://www.illumina.com/index.ilmn {{PAGENAME}}] is a converter ...") (current)
- 08:33, 30 September 2011 (diff | hist) . . (+10) . . m BWA (current)
- 08:32, 30 September 2011 (diff | hist) . . (+608) . . N BWA (Created page with "{{software info |description=A fast light-weighted tool that aligns relatively short sequences (queries) to a sequence database (target). |license=free |fields=bioinformatics }}...")
- 08:30, 30 September 2011 (diff | hist) . . (+10) . . m BLAT (current)
- 08:29, 30 September 2011 (diff | hist) . . (+541) . . N BLAT (Created page with "{{software info |description=an alignment tool like BLAST, but it is structured differently. |license=free |fields=bioinformatics }} [http://users.soe.ucsc.edu/~kent/ {{PAGENAME...")
- 08:27, 30 September 2011 (diff | hist) . . (+799) . . N BEDTools (Created page with "{{software info |description=BEDTools is a software suite for the comparison, manipulation and annotation of genomic features in Browser Extensible Data (BED) and General Feature...") (current)
- 08:24, 30 September 2011 (diff | hist) . . (+14) . . m ANNOVAR (current)
- 08:24, 30 September 2011 (diff | hist) . . (-57) . . m Ab wtp (current)
- 08:17, 30 September 2011 (diff | hist) . . (+599) . . N Ab wtp (Created page with "{{software info |description=Alignment tool for SOLiD transcript reads |license=free |fields=semicolon separated list of field category names (newlines are ignored) }} [http://s...")
- 08:14, 30 September 2011 (diff | hist) . . (+917) . . N ANNOVAR (Created page with "__NOTOC__ {{software info |description=Functional annotation of genetic variants from high-throughput sequencing data |license=free |fields= }} [http://www.openbioinformatics.or...")
- 14:35, 29 September 2011 (diff | hist) . . (-76) . . m Kalkyl (Undo revision 2854 by Samuel Lampa (UPPMAX) (talk))
- 14:33, 29 September 2011 (diff | hist) . . (+76) . . Kalkyl
- 14:10, 29 September 2011 (diff | hist) . . (0) . . File:Samuel.png (uploaded a new version of "File:Samuel.png") (current)
- 14:07, 29 September 2011 (diff | hist) . . (+49) . . m User:Samuel Lampa (UPPMAX)
- 14:06, 29 September 2011 (diff | hist) . . (0) . . N File:Samuel.png
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