Main Page

From SNIC Documentation
Revision as of 15:27, 17 February 2011 by Joel Hedlund (NSC) (talk | contribs) (Bioinformatics)
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Welcome to the SNIC knowledge base and documentations site.

NOTE: This site is under constant development and is still in the early days of it's existence!

The aim of this site is that you should be able to get information, help, tips-and-tricks, etc. regarding the most widely used computational tools.

Application Experts

  • Torben Rasmussen, NSC
  • Johan Raber, NSC
  • Chandan Basu, NSC
  • Joel Hedlund, NSC
  • Jonathan Vincent, PDC
  • ... ...

System Experts

Scientific Topics

Computational Chemistry

Prominent Software

  • Molecular Dynamics
    1. GROMACS
    2. Namd
    3. Amber
  • Monte Carlo Thermodynamics
  • QSAR

Computational Physics

Prominent Software

Condensed Matter

  • VASP

Astrophysics

Bioinformatics

  • Sequence analysis
    1. Blast
    2. HMMER
  • Computational evolutionary biology
  • Docking
  • Molecular Modeling

Meteorology and Climatology

  • ECEARTH
  • RCA
  • RCO
  • NEMO

Visualization and post-processing

  • Grace
  • Gnuplot

Software Development

  • Compilers and Libraries
    1. Intel, PGI, GNU Compilers
    2. MPI
    3. BLAS
    4. MKL
  • Profiling and Debugging
    1. TotalView
    2. Vampir
    3. Valgrind
    4. Intel trace analyzer

Grid information (SweGrid/Swestore)

Swestore

Using This Wiki

Consult the User's Guide for information on using the wiki software. For formatting and mediawiki markup details see Formatting. For adding links see Links. Also have a look at the MediaWiki FAQ.

Please do not upload or otherwise publish copyrighted material on this wiki.