Difference between revisions of "IRODS iCommands installation on CentOS 7"

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(Swestore iRODS is decomissioned)
(Tag: New redirect)
 
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'''Back to [https://snicdocs.nsc.liu.se/wiki/Swestore-iRODS Swestore-iRODS Documentation]'''
+
#REDIRECT[[Swestore iRODS is decommissioned]]
 
 
 
 
Here is an example of iRODS iCommands installation on CentOS 7, from iRODS repository.
 
 
 
== Install the public key and add the repository ==
 
[vitlacil@localhost ~]$ sudo rpm --import https://packages.irods.org/irods-signing-key.asc
 
[sudo] password for vitlacil: *************************
 
[vitlacil@localhost ~]$ wget -qO - https://packages.irods.org/renci-irods.yum.repo | sudo tee /etc/yum.repos.d/renci-irods.yum.repo
 
    [renci-irods]
 
    name=RENCI iRODS Repository
 
    baseurl=https://packages.irods.org/yum/pool/centos$releasever/$basearch
 
    enabled=1
 
    gpgcheck=1
 
    repo_gpgcheck=1
 
    gpgkey=https://packages.irods.org/irods-signing-key.asc
 
[vitlacil@localhost ~]$
 
 
== List available packages ==
 
[vitlacil@localhost ~]$ sudo yum search irods
 
Loaded plugins: fastestmirror, langpacks
 
Loading mirror speeds from cached hostfile
 
  * base: mirror.hosthink.net
 
  * extras: mirror.hosthink.net
 
  * updates: mirror.hosthink.net
 
renci-irods/7/x86_64/signature                                              |  819 B  00:00:00     
 
Retrieving key from https://packages.irods.org/irods-signing-key.asc
 
Importing GPG key 0xACF9B42B:
 
  Userid    : "iRODS Consortium <info@irods.org>"
 
  Fingerprint: 9014 ff9f 75c6 6c77 1f1c b574 bd92 5dbd acf9 b42b
 
  From      : https://packages.irods.org/irods-signing-key.asc
 
Is this ok [y/N]: y
 
renci-irods/7/x86_64/signature                                              | 2.9 kB  00:00:04 !!!
 
renci-irods/7/x86_64/primary_db                                              |  63 kB  00:00:01     
 
======================================== N/S matched: irods ========================================
 
irods-externals-autoconf5ad3567c-0.x86_64 : iRODS Build Dependency
 
irods-externals-avro1.7.7-0.x86_64 : iRODS Build Dependency
 
irods-externals-avro1.8.2-0.x86_64 : iRODS Build Dependency
 
irods-externals-avro1.9.0-0.x86_64 : iRODS Build Dependency
 
irods-externals-aws-sdk-cpp1.4.89-0.x86_64 : iRODS Build Dependency
 
irods-externals-aws-sdk-cpp1.4.89-1.x86_64 : iRODS Build Dependency
 
irods-externals-boost1.60.0-0.x86_64 : iRODS Build Dependency
 
irods-externals-boost1.67.0-0.x86_64 : iRODS Build Dependency
 
irods-externals-catch22.3.0-0.x86_64 : iRODS Build Dependency
 
irods-externals-clang-runtime3.8-0.x86_64 : iRODS Build Dependency
 
irods-externals-clang-runtime6.0-0.x86_64 : iRODS Build Dependency
 
irods-externals-clang3.8-0.x86_64 : iRODS Build Dependency
 
irods-externals-clang6.0-0.x86_64 : iRODS Build Dependency
 
irods-externals-cmake3.11.4-0.x86_64 : iRODS Build Dependency
 
irods-externals-cmake3.5.2-0.x86_64 : iRODS Build Dependency
 
irods-externals-cppzmq4.1-0.x86_64 : iRODS Build Dependency
 
irods-externals-cppzmq4.2.3-0.x86_64 : iRODS Build Dependency
 
irods-externals-cpr1.3.0-0.x86_64 : iRODS Build Dependency
 
irods-externals-cpr1.3.0-1.x86_64 : iRODS Build Dependency
 
irods-externals-elasticlient0.1.0-0.x86_64 : iRODS Build Dependency
 
irods-externals-elasticlient0.1.0-1.x86_64 : iRODS Build Dependency
 
irods-externals-epm4.2-0.x86_64 : iRODS Build Dependency
 
irods-externals-fmt6.1.2-0.x86_64 : iRODS Build Dependency
 
irods-externals-fmt6.1.2-1.x86_64 : iRODS Build Dependency
 
irods-externals-imagemagick7.0.3-0.x86_64 : iRODS Build Dependency
 
irods-externals-imagemagick7.0.8-0.x86_64 : iRODS Build Dependency
 
irods-externals-jansson2.7-0.x86_64 : iRODS Build Dependency
 
irods-externals-json3.0.1-0.x86_64 : iRODS Build Dependency
 
irods-externals-json3.1.2-0.x86_64 : iRODS Build Dependency
 
irods-externals-json3.7.3-0.x86_64 : iRODS Build Dependency
 
irods-externals-libarchive3.1.2-0.x86_64 : iRODS Build Dependency
 
irods-externals-libarchive3.3.2-0.x86_64 : iRODS Build Dependency
 
irods-externals-libarchive3.3.2-1.x86_64 : iRODS Build Dependency
 
irods-externals-libs359b62371-0.x86_64 : iRODS Build Dependency
 
irods-externals-libs3a30e55e8-0.x86_64 : iRODS Build Dependency
 
irods-externals-libs3a30e55e8-1.x86_64 : iRODS Build Dependency
 
irods-externals-libs3f6a2098e-0.x86_64 : iRODS Build Dependency
 
irods-externals-mungefs1.0.2-0.x86_64 : iRODS Build Dependency
 
irods-externals-mungefs1.0.3-0.x86_64 : iRODS Build Dependency
 
irods-externals-nanodbc2.13.0-0.x86_64 : iRODS Build Dependency
 
irods-externals-qpid-with-proton0.34-0.x86_64 : iRODS Build Dependency
 
irods-externals-qpid-with-proton0.34-1.x86_64 : iRODS Build Dependency
 
irods-externals-redis4.0.10-0.x86_64 : iRODS Build Dependency
 
irods-externals-redis4.0.8-0.x86_64 : iRODS Build Dependency
 
irods-externals-spdlog0.17.0-0.x86_64 : iRODS Build Dependency
 
irods-externals-spdlog1.5.0-0.x86_64 : iRODS Build Dependency
 
irods-externals-spdlog1.5.0-1.x86_64 : iRODS Build Dependency
 
irods-externals-zeromq4-14.1.3-0.x86_64 : iRODS Build Dependency
 
irods-externals-zeromq4-14.1.6-0.x86_64 : iRODS Build Dependency
 
irods-auth-plugin-gsi.x86_64 : The integrated Rule-Oriented Data System
 
irods-auth-plugin-krb.x86_64 : The integrated Rule-Oriented Data System
 
irods-database-plugin-mysql.x86_64 : The integrated Rule-Oriented Data System
 
irods-database-plugin-oracle.x86_64 : The integrated Rule-Oriented Data System
 
irods-database-plugin-postgres.x86_64 : The integrated Rule-Oriented Data System
 
irods-devel.x86_64 : The integrated Rule-Oriented Data System
 
irods-icommands.x86_64 : The integrated Rule-Oriented Data System
 
irods-microservice-plugins-curl.x86_64 : The integrated Rule-Oriented Data System
 
irods-resource-plugin-s3.x86_64 : The integrated Rule-Oriented Data System
 
irods-rule-engine-plugin-apply-access-time.x86_64 : The integrated Rule-Oriented Data System
 
irods-rule-engine-plugin-audit-amqp.x86_64 : The integrated Rule-Oriented Data System
 
irods-rule-engine-plugin-data-movement.x86_64 : The integrated Rule-Oriented Data System
 
irods-rule-engine-plugin-data-replication.x86_64 : The integrated Rule-Oriented Data System
 
irods-rule-engine-plugin-data-verification.x86_64 : The integrated Rule-Oriented Data System
 
irods-rule-engine-plugin-python.x86_64 : The integrated Rule-Oriented Data System
 
irods-rule-engine-plugin-storage-tiering.x86_64 : The integrated Rule-Oriented Data System
 
irods-rule-engine-plugin-tiered-storage.x86_64 : The integrated Rule-Oriented Data System
 
irods-rule-engine-plugin-unified-storage-tiering.x86_64 : The integrated Rule-Oriented Data System
 
irods-rule-engine-plugin-update-collection-mtime.x86_64 : The integrated Rule-Oriented Data System
 
irods-runtime.x86_64 : The integrated Rule-Oriented Data System
 
irods-server.x86_64 : The integrated Rule-Oriented Data System
 
irods_rule_engine_plugin-apply_access_time.x86_64 : The integrated Rule-Oriented Data System
 
irods_rule_engine_plugin-data_movement.x86_64 : The integrated Rule-Oriented Data System
 
irods_rule_engine_plugin-data_replication.x86_64 : The integrated Rule-Oriented Data System
 
irods_rule_engine_plugin-data_verification.x86_64 : The integrated Rule-Oriented Data System
 
irods_rule_engine_plugin-storage_tiering.x86_64 : The integrated Rule-Oriented Data System
 
irods_rule_engine_plugin-unified_storage_tiering.x86_64 : The integrated Rule-Oriented Data System
 
 
  Name and summary matches only, use "search all" for everything.
 
 
[vitlacil@localhost ~]$
 
 
 
== Install additional repositories needed for Python dependencies ==
 
[vitlacil@localhost ~]$ sudo yum install epel-release
 
    Loaded plugins: fastestmirror, langpacks
 
    Loading mirror speeds from cached hostfile
 
  * base: mirror.hosthink.net
 
  * extras: mirror.hosthink.net
 
  * updates: mirror.hosthink.net
 
Resolving Dependencies
 
--> Running transaction check
 
---> Package epel-release.noarch 0:7-11 will be installed
 
--> Finished Dependency Resolution
 
 
Dependencies Resolved
 
 
====================================================================================================
 
  Package                    Arch                  Version              Repository            Size
 
====================================================================================================
 
Installing:
 
  epel-release                noarch                7-11                extras                15 k
 
 
Transaction Summary
 
====================================================================================================
 
Install  1 Package
 
 
Total download size: 15 k
 
Installed size: 24 k
 
Is this ok [y/d/N]: y
 
Downloading packages:
 
epel-release-7-11.noarch.rpm                                                |  15 kB  00:00:00   
 
Running transaction check
 
Running transaction test
 
Transaction test succeeded
 
Running transaction
 
  Installing : epel-release-7-11.noarch                                                        1/1
 
  Verifying  : epel-release-7-11.noarch                                                        1/1
 
 
Installed:
 
  epel-release.noarch 0:7-11                                                                       
 
 
Complete!
 
 
 
== ... and Python dependencies ==
 
[vitlacil@localhost ~]$ sudo yum install python-psutil python-jsonschema
 
Loaded plugins: fastestmirror, langpacks
 
Loading mirror speeds from cached hostfile
 
epel/x86_64/metalink                                                        |  24 kB  00:00:00   
 
  * base: mirror.zetup.net
 
  * epel: mirror.zetup.net
 
  * extras: mirror.zetup.net
 
  * updates: mirror.zetup.net
 
epel                                                                        | 4.7 kB  00:00:00   
 
(1/3): epel/x86_64/group_gz                                                  |  95 kB  00:00:00   
 
(2/3): epel/x86_64/updateinfo                                                | 1.0 MB  00:00:00   
 
(3/3): epel/x86_64/primary_db                                                | 6.8 MB  00:00:00   
 
Resolving Dependencies
 
--> Running transaction check
 
---> Package python2-jsonschema.noarch 0:2.5.1-4.el7 will be installed
 
--> Processing Dependency: python-repoze-lru for package: python2-jsonschema-2.5.1-4.el7.noarch
 
---> Package python2-psutil.x86_64 0:5.6.7-1.el7 will be installed
 
--> Running transaction check
 
---> Package python-repoze-lru.noarch 0:0.4-3.el7 will be installed
 
--> Finished Dependency Resolution
 
 
Dependencies Resolved
 
 
 
====================================================================================================
 
  Package                        Arch              Version                  Repository        Size
 
====================================================================================================
 
Installing:
 
  python2-jsonschema            noarch            2.5.1-4.el7              epel              75 k
 
  python2-psutil                x86_64            5.6.7-1.el7              epel            399 k
 
Installing for dependencies:
 
  python-repoze-lru              noarch            0.4-3.el7                epel              13 k
 
 
Transaction Summary
 
====================================================================================================
 
Install  2 Packages (+1 Dependent package)
 
 
Total download size: 487 k
 
Installed size: 2.6 M
 
Is this ok [y/d/N]: y
 
Downloading packages:
 
warning: /var/cache/yum/x86_64/7/epel/packages/python-repoze-lru-0.4-3.el7.noarch.rpm: Header V3 RSA/SHA256 Signature, key ID 352c64e5: NOKEY
 
Public key for python-repoze-lru-0.4-3.el7.noarch.rpm is not installed
 
(1/3): python-repoze-lru-0.4-3.el7.noarch.rpm                                |  13 kB  00:00:00   
 
(2/3): python2-jsonschema-2.5.1-4.el7.noarch.rpm                            |  75 kB  00:00:00   
 
(3/3): python2-psutil-5.6.7-1.el7.x86_64.rpm                                | 399 kB  00:00:00   
 
----------------------------------------------------------------------------------------------------
 
Total                                                              1.3 MB/s | 487 kB  00:00:00   
 
Retrieving key from file:///etc/pki/rpm-gpg/RPM-GPG-KEY-EPEL-7
 
Importing GPG key 0x352C64E5:
 
  Userid    : "Fedora EPEL (7) <epel@fedoraproject.org>"
 
  Fingerprint: 91e9 7d7c 4a5e 96f1 7f3e 888f 6a2f aea2 352c 64e5
 
  Package    : epel-release-7-11.noarch (@extras)
 
  From      : /etc/pki/rpm-gpg/RPM-GPG-KEY-EPEL-7
 
Is this ok [y/N]: y
 
Running transaction check
 
Running transaction test
 
Transaction test succeeded
 
Running transaction
 
  Installing : python-repoze-lru-0.4-3.el7.noarch                                              1/3
 
  Installing : python2-jsonschema-2.5.1-4.el7.noarch                                            2/3
 
  Installing : python2-psutil-5.6.7-1.el7.x86_64                                                3/3
 
  Verifying  : python2-jsonschema-2.5.1-4.el7.noarch                                            1/3
 
  Verifying  : python2-psutil-5.6.7-1.el7.x86_64                                                2/3
 
  Verifying  : python-repoze-lru-0.4-3.el7.noarch                                              3/3
 
 
Installed:
 
  python2-jsonschema.noarch 0:2.5.1-4.el7            python2-psutil.x86_64 0:5.6.7-1.el7         
 
 
Dependency Installed:
 
  python-repoze-lru.noarch 0:0.4-3.el7                                                             
 
 
Complete!
 
[vitlacil@localhost ~]$
 
 
 
== Install iRODS iCommands ==
 
[vitlacil@localhost ~]$ sudo yum install irods-icommands
 
Loaded plugins: fastestmirror, langpacks
 
Loading mirror speeds from cached hostfile
 
  * base: mirrors.glesys.net
 
  * epel: mirrors.glesys.net
 
  * extras: mirrors.glesys.net
 
  * updates: mirrors.glesys.net
 
Resolving Dependencies
 
--> Running transaction check
 
---> Package irods-icommands.x86_64 0:4.2.7-1 will be installed
 
--> Processing Dependency: irods-runtime = 4.2.7 for package: irods-icommands-4.2.7-1.x86_64
 
--> Processing Dependency: irods-externals-avro1.7.7-0 for package: irods-icommands-4.2.7-1.x86_64
 
--> Processing Dependency: irods-externals-jansson2.7-0 for package: irods-icommands-4.2.7-1.x86_64
 
--> Processing Dependency: irods-externals-clang-runtime3.8-0 for package: irods-icommands-4.2.7-1.x86_64
 
--> Processing Dependency: irods-externals-zeromq4-14.1.3-0 for package: irods-icommands-4.2.7-1.x86_64
 
--> Processing Dependency: irods-externals-boost1.60.0-0 for package: irods-icommands-4.2.7-1.x86_64
 
--> Processing Dependency: irods-externals-libarchive3.3.2-0 for package: irods-icommands-4.2.7-1.x86_64
 
--> Running transaction check
 
---> Package irods-externals-avro1.7.7-0.x86_64 0:1.0-1 will be installed
 
---> Package irods-externals-boost1.60.0-0.x86_64 0:1.0-1 will be installed
 
---> Package irods-externals-clang-runtime3.8-0.x86_64 0:1.0-1 will be installed
 
---> Package irods-externals-jansson2.7-0.x86_64 0:1.0-1 will be installed
 
---> Package irods-externals-libarchive3.3.2-0.x86_64 0:1.0-1 will be installed
 
---> Package irods-externals-zeromq4-14.1.3-0.x86_64 0:1.0-1 will be installed
 
---> Package irods-runtime.x86_64 0:4.2.7-1 will be installed
 
--> Finished Dependency Resolution
 
 
Dependencies Resolved
 
 
 
====================================================================================================
 
  Package                                  Arch          Version          Repository          Size
 
====================================================================================================
 
Installing:
 
  irods-icommands                          x86_64        4.2.7-1          renci-irods        526 k
 
Installing for dependencies:
 
  irods-externals-avro1.7.7-0              x86_64        1.0-1            renci-irods        1.5 M
 
  irods-externals-boost1.60.0-0            x86_64        1.0-1            renci-irods        13 M
 
  irods-externals-clang-runtime3.8-0        x86_64        1.0-1            renci-irods        347 k
 
  irods-externals-jansson2.7-0              x86_64        1.0-1            renci-irods        165 k
 
  irods-externals-libarchive3.3.2-0        x86_64        1.0-1            renci-irods        1.7 M
 
  irods-externals-zeromq4-14.1.3-0          x86_64        1.0-1            renci-irods        549 k
 
  irods-runtime                            x86_64        4.2.7-1          renci-irods        3.6 M
 
 
Transaction Summary
 
====================================================================================================
 
Install  1 Package (+7 Dependent packages)
 
 
Total download size: 21 M
 
Installed size: 158 M
 
Is this ok [y/d/N]: y
 
Downloading packages:
 
(1/8): irods-externals-avro1.7.7-0-1.0-1.x86_64.rpm                          | 1.5 MB  00:00:03   
 
(2/8): irods-externals-clang-runtime3.8-0-1.0-1.x86_64.rpm                  | 347 kB  00:00:00   
 
(3/8): irods-externals-jansson2.7-0-1.0-1.x86_64.rpm                        | 165 kB  00:00:00   
 
(4/8): irods-externals-libarchive3.3.2-0-1.0-1.x86_64.rpm                    | 1.7 MB  00:00:03   
 
(5/8): irods-externals-zeromq4-14.1.3-0-1.0-1.x86_64.rpm                    | 549 kB  00:00:01   
 
(6/8): irods-icommands-4.2.7-1.x86_64.rpm                                    | 526 kB  00:00:01   
 
(7/8): irods-externals-boost1.60.0-0-1.0-1.x86_64.rpm                        |  13 MB  00:00:16   
 
(8/8): irods-runtime-4.2.7-1.x86_64.rpm                                      | 3.6 MB  00:00:08   
 
----------------------------------------------------------------------------------------------------
 
Total                                                              1.0 MB/s |  21 MB  00:00:20     
 
Running transaction check
 
Running transaction test
 
Transaction test succeeded
 
Running transaction
 
  Installing : irods-externals-avro1.7.7-0-1.0-1.x86_64                                        1/8
 
  Installing : irods-externals-boost1.60.0-0-1.0-1.x86_64                                      2/8
 
  Installing : irods-externals-zeromq4-14.1.3-0-1.0-1.x86_64                                    3/8
 
  Installing : irods-externals-libarchive3.3.2-0-1.0-1.x86_64                                  4/8
 
  Installing : irods-externals-jansson2.7-0-1.0-1.x86_64                                        5/8
 
  Installing : irods-externals-clang-runtime3.8-0-1.0-1.x86_64                                  6/8
 
  Installing : irods-runtime-4.2.7-1.x86_64                                                    7/8
 
  Installing : irods-icommands-4.2.7-1.x86_64                                                  8/8
 
  Verifying  : irods-externals-clang-runtime3.8-0-1.0-1.x86_64                                  1/8
 
  Verifying  : irods-externals-jansson2.7-0-1.0-1.x86_64                                        2/8
 
  Verifying  : irods-externals-libarchive3.3.2-0-1.0-1.x86_64                                  3/8
 
  Verifying  : irods-externals-zeromq4-14.1.3-0-1.0-1.x86_64                                    4/8
 
  Verifying  : irods-externals-boost1.60.0-0-1.0-1.x86_64                                      5/8
 
  Verifying  : irods-icommands-4.2.7-1.x86_64                                                  6/8
 
  Verifying  : irods-externals-avro1.7.7-0-1.0-1.x86_64                                        7/8
 
  Verifying  : irods-runtime-4.2.7-1.x86_64                                                    8/8
 
 
Installed:
 
  irods-icommands.x86_64 0:4.2.7-1                                                                 
 
 
Dependency Installed:
 
  irods-externals-avro1.7.7-0.x86_64 0:1.0-1        irods-externals-boost1.60.0-0.x86_64 0:1.0-1 
 
  irods-externals-clang-runtime3.8-0.x86_64 0:1.0-1 irods-externals-jansson2.7-0.x86_64 0:1.0-1   
 
  irods-externals-libarchive3.3.2-0.x86_64 0:1.0-1  irods-externals-zeromq4-14.1.3-0.x86_64 0:1.0-1
 
  irods-runtime.x86_64 0:4.2.7-1                 
 
 
Complete!
 
[vitlacil@localhost ~]$
 
 
 
== Configure the iRODS environment ==
 
NOTE: Create your own configuration file !!
 
 
 
[vitlacil@localhost ~]$ cat /home/vitlacil/.irods/irods_environment.json
 
{
 
  "irods_host": "irods-login.swestore.se",
 
  "irods_port": 2432,
 
  "irods_default_resource": "pdc-gpfs",
 
  "irods_home": "/snic.se/home/s_dejvi",
 
  "irods_cwd": "/snic.se/home/s_dejvi",
 
  "irods_user_name": "s_dejvi",
 
  "irods_zone_name": "snic.se",
 
  "irods_client_server_negotiation": "request_server_negotiation",
 
  "irods_client_server_policy": "CS_NEG_REFUSE",
 
  "irods_default_hash_scheme": "SHA256",
 
  "irods_encryption_algorithm": "AES-256-CBC",
 
  "irods_encryption_key_size": 32,
 
  "irods_encryption_num_hash_rounds": 16,
 
  "irods_encryption_salt_size": 8,
 
  "irods_match_hash_policy": "compatible",
 
  "irods_authentication_scheme" : "PAM"
 
}
 
 
[vitlacil@localhost ~]$
 
 
 
== Authenticate and test iRODS iCommands client  ==
 
[vitlacil@localhost ~]$ iinit
 
Enter your current PAM password: *************************
 
[vitlacil@localhost ~]$ ils
 
/snic.se/home/s_dejvi:
 
  .DS_Store
 
  ._.DS_Store
 
  SISO.Certificate.pdf
 
  project_role_descriptions.docx
 
  worst-day-fosdem-2014.pdf
 
  C- /snic.se/home/s_dejvi/0 TiddlyWiki
 
  C- /snic.se/home/s_dejvi/0 reading
 
  C- /snic.se/home/s_dejvi/EOSC
 
  C- /snic.se/home/s_dejvi/EUDAT
 
  C- /snic.se/home/s_dejvi/FAIR
 
  C- /snic.se/home/s_dejvi/FitSM
 
  .....
 
 
 
[vitlacil@localhost ~]$
 
 
 
'''Back to [https://snicdocs.nsc.liu.se/wiki/Swestore-iRODS Swestore-iRODS Documentation]'''
 

Latest revision as of 10:12, 8 February 2023