Difference between revisions of "IRODS iCommands installation on CentOS 7"

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(→‎And Python dependencies)
(→‎... and Python dependencies)
Line 228: Line 228:
 
  [vitlacil@localhost ~]$  
 
  [vitlacil@localhost ~]$  
  
−
 
+
== Install iRODS iCommands ==
−
 
+
[vitlacil@localhost ~]$ sudo yum install irods-icommands
−
[vitlacil@localhost ~]$  
+
Loaded plugins: fastestmirror, langpacks
−
[vitlacil@localhost ~]$
+
Loading mirror speeds from cached hostfile
−
[vitlacil@localhost ~]$  
+
  * base: mirrors.glesys.net
 +
  * epel: mirrors.glesys.net
 +
  * extras: mirrors.glesys.net
 +
  * updates: mirrors.glesys.net
 +
Resolving Dependencies
 +
--> Running transaction check
 +
---> Package irods-icommands.x86_64 0:4.2.7-1 will be installed
 +
--> Processing Dependency: irods-runtime = 4.2.7 for package: irods-icommands-4.2.7-1.x86_64
 +
--> Processing Dependency: irods-externals-avro1.7.7-0 for package: irods-icommands-4.2.7-1.x86_64
 +
--> Processing Dependency: irods-externals-jansson2.7-0 for package: irods-icommands-4.2.7-1.x86_64
 +
--> Processing Dependency: irods-externals-clang-runtime3.8-0 for package: irods-icommands-4.2.7-1.x86_64
 +
--> Processing Dependency: irods-externals-zeromq4-14.1.3-0 for package: irods-icommands-4.2.7-1.x86_64
 +
--> Processing Dependency: irods-externals-boost1.60.0-0 for package: irods-icommands-4.2.7-1.x86_64
 +
--> Processing Dependency: irods-externals-libarchive3.3.2-0 for package: irods-icommands-4.2.7-1.x86_64
 +
--> Running transaction check
 +
---> Package irods-externals-avro1.7.7-0.x86_64 0:1.0-1 will be installed
 +
---> Package irods-externals-boost1.60.0-0.x86_64 0:1.0-1 will be installed
 +
---> Package irods-externals-clang-runtime3.8-0.x86_64 0:1.0-1 will be installed
 +
---> Package irods-externals-jansson2.7-0.x86_64 0:1.0-1 will be installed
 +
---> Package irods-externals-libarchive3.3.2-0.x86_64 0:1.0-1 will be installed
 +
---> Package irods-externals-zeromq4-14.1.3-0.x86_64 0:1.0-1 will be installed
 +
---> Package irods-runtime.x86_64 0:4.2.7-1 will be installed
 +
--> Finished Dependency Resolution
 +
 +
Dependencies Resolved
 +
 
 +
====================================================================================================
 +
  Package                                  Arch          Version          Repository          Size
 +
====================================================================================================
 +
Installing:
 +
  irods-icommands                          x86_64        4.2.7-1          renci-irods        526 k
 +
Installing for dependencies:
 +
  irods-externals-avro1.7.7-0              x86_64        1.0-1            renci-irods        1.5 M
 +
  irods-externals-boost1.60.0-0            x86_64        1.0-1            renci-irods        13 M
 +
  irods-externals-clang-runtime3.8-0        x86_64        1.0-1            renci-irods        347 k
 +
  irods-externals-jansson2.7-0              x86_64        1.0-1            renci-irods        165 k
 +
  irods-externals-libarchive3.3.2-0        x86_64        1.0-1            renci-irods        1.7 M
 +
  irods-externals-zeromq4-14.1.3-0          x86_64        1.0-1            renci-irods        549 k
 +
  irods-runtime                            x86_64        4.2.7-1          renci-irods        3.6 M
 +
 +
Transaction Summary
 +
====================================================================================================
 +
Install  1 Package (+7 Dependent packages)
 +
 +
Total download size: 21 M
 +
Installed size: 158 M
 +
Is this ok [y/d/N]: y
 +
Downloading packages:
 +
(1/8): irods-externals-avro1.7.7-0-1.0-1.x86_64.rpm                          | 1.5 MB  00:00:03   
 +
(2/8): irods-externals-clang-runtime3.8-0-1.0-1.x86_64.rpm                  | 347 kB  00:00:00   
 +
(3/8): irods-externals-jansson2.7-0-1.0-1.x86_64.rpm                        | 165 kB  00:00:00   
 +
(4/8): irods-externals-libarchive3.3.2-0-1.0-1.x86_64.rpm                    | 1.7 MB  00:00:03   
 +
(5/8): irods-externals-zeromq4-14.1.3-0-1.0-1.x86_64.rpm                    | 549 kB  00:00:01   
 +
(6/8): irods-icommands-4.2.7-1.x86_64.rpm                                    | 526 kB  00:00:01   
 +
(7/8): irods-externals-boost1.60.0-0-1.0-1.x86_64.rpm                        |  13 MB  00:00:16   
 +
(8/8): irods-runtime-4.2.7-1.x86_64.rpm                                      | 3.6 MB  00:00:08   
 +
----------------------------------------------------------------------------------------------------
 +
Total                                                              1.0 MB/s |  21 MB  00:00:20     
 +
Running transaction check
 +
Running transaction test
 +
Transaction test succeeded
 +
Running transaction
 +
  Installing : irods-externals-avro1.7.7-0-1.0-1.x86_64                                        1/8
 +
  Installing : irods-externals-boost1.60.0-0-1.0-1.x86_64                                      2/8
 +
  Installing : irods-externals-zeromq4-14.1.3-0-1.0-1.x86_64                                    3/8
 +
  Installing : irods-externals-libarchive3.3.2-0-1.0-1.x86_64                                  4/8
 +
  Installing : irods-externals-jansson2.7-0-1.0-1.x86_64                                        5/8
 +
  Installing : irods-externals-clang-runtime3.8-0-1.0-1.x86_64                                  6/8
 +
  Installing : irods-runtime-4.2.7-1.x86_64                                                    7/8
 +
  Installing : irods-icommands-4.2.7-1.x86_64                                                  8/8
 +
  Verifying  : irods-externals-clang-runtime3.8-0-1.0-1.x86_64                                  1/8
 +
  Verifying  : irods-externals-jansson2.7-0-1.0-1.x86_64                                        2/8
 +
  Verifying  : irods-externals-libarchive3.3.2-0-1.0-1.x86_64                                  3/8
 +
  Verifying  : irods-externals-zeromq4-14.1.3-0-1.0-1.x86_64                                    4/8
 +
  Verifying  : irods-externals-boost1.60.0-0-1.0-1.x86_64                                      5/8
 +
  Verifying  : irods-icommands-4.2.7-1.x86_64                                                  6/8
 +
  Verifying  : irods-externals-avro1.7.7-0-1.0-1.x86_64                                        7/8
 +
  Verifying  : irods-runtime-4.2.7-1.x86_64                                                    8/8
 +
 +
Installed:
 +
  irods-icommands.x86_64 0:4.2.7-1                                                                 
 +
 +
Dependency Installed:
 +
  irods-externals-avro1.7.7-0.x86_64 0:1.0-1        irods-externals-boost1.60.0-0.x86_64 0:1.0-1 
 +
  irods-externals-clang-runtime3.8-0.x86_64 0:1.0-1 irods-externals-jansson2.7-0.x86_64 0:1.0-1   
 +
  irods-externals-libarchive3.3.2-0.x86_64 0:1.0-1  irods-externals-zeromq4-14.1.3-0.x86_64 0:1.0-1
 +
  irods-runtime.x86_64 0:4.2.7-1                 
 +
 +
Complete!
 +
[vitlacil@localhost ~]$  
 
[vitlacil@localhost ~]$  
 
[vitlacil@localhost ~]$  
−
[vitlacil@localhost ~]$
 
−
[vitlacil@localhost ~]$
 
−
[vitlacil@localhost ~]$ sudo yum install irods-icommands
 
−
Loaded plugins: fastestmirror, langpacks
 
−
Loading mirror speeds from cached hostfile
 
−
* base: mirrors.glesys.net
 
−
* epel: mirrors.glesys.net
 
−
* extras: mirrors.glesys.net
 
−
* updates: mirrors.glesys.net
 
−
Resolving Dependencies
 
−
--> Running transaction check
 
−
---> Package irods-icommands.x86_64 0:4.2.7-1 will be installed
 
−
--> Processing Dependency: irods-runtime = 4.2.7 for package: irods-icommands-4.2.7-1.x86_64
 
−
--> Processing Dependency: irods-externals-avro1.7.7-0 for package: irods-icommands-4.2.7-1.x86_64
 
−
--> Processing Dependency: irods-externals-jansson2.7-0 for package: irods-icommands-4.2.7-1.x86_64
 
−
--> Processing Dependency: irods-externals-clang-runtime3.8-0 for package: irods-icommands-4.2.7-1.x86_64
 
−
--> Processing Dependency: irods-externals-zeromq4-14.1.3-0 for package: irods-icommands-4.2.7-1.x86_64
 
−
--> Processing Dependency: irods-externals-boost1.60.0-0 for package: irods-icommands-4.2.7-1.x86_64
 
−
--> Processing Dependency: irods-externals-libarchive3.3.2-0 for package: irods-icommands-4.2.7-1.x86_64
 
−
--> Running transaction check
 
−
---> Package irods-externals-avro1.7.7-0.x86_64 0:1.0-1 will be installed
 
−
---> Package irods-externals-boost1.60.0-0.x86_64 0:1.0-1 will be installed
 
−
---> Package irods-externals-clang-runtime3.8-0.x86_64 0:1.0-1 will be installed
 
−
---> Package irods-externals-jansson2.7-0.x86_64 0:1.0-1 will be installed
 
−
---> Package irods-externals-libarchive3.3.2-0.x86_64 0:1.0-1 will be installed
 
−
---> Package irods-externals-zeromq4-14.1.3-0.x86_64 0:1.0-1 will be installed
 
−
---> Package irods-runtime.x86_64 0:4.2.7-1 will be installed
 
−
--> Finished Dependency Resolution
 
−
 
−
Dependencies Resolved
 
−
 
−
====================================================================================================
 
−
Package                                  Arch          Version          Repository          Size
 
−
====================================================================================================
 
−
Installing:
 
−
irods-icommands                          x86_64        4.2.7-1          renci-irods        526 k
 
−
Installing for dependencies:
 
−
irods-externals-avro1.7.7-0              x86_64        1.0-1            renci-irods        1.5 M
 
−
irods-externals-boost1.60.0-0            x86_64        1.0-1            renci-irods        13 M
 
−
irods-externals-clang-runtime3.8-0        x86_64        1.0-1            renci-irods        347 k
 
−
irods-externals-jansson2.7-0              x86_64        1.0-1            renci-irods        165 k
 
−
irods-externals-libarchive3.3.2-0        x86_64        1.0-1            renci-irods        1.7 M
 
−
irods-externals-zeromq4-14.1.3-0          x86_64        1.0-1            renci-irods        549 k
 
−
irods-runtime                            x86_64        4.2.7-1          renci-irods        3.6 M
 
−
 
−
Transaction Summary
 
−
====================================================================================================
 
−
Install  1 Package (+7 Dependent packages)
 
−
 
−
Total download size: 21 M
 
−
Installed size: 158 M
 
−
Is this ok [y/d/N]: y
 
−
Downloading packages:
 
−
(1/8): irods-externals-avro1.7.7-0-1.0-1.x86_64.rpm                          | 1.5 MB  00:00:03   
 
−
(2/8): irods-externals-clang-runtime3.8-0-1.0-1.x86_64.rpm                  | 347 kB  00:00:00   
 
−
(3/8): irods-externals-jansson2.7-0-1.0-1.x86_64.rpm                        | 165 kB  00:00:00   
 
−
(4/8): irods-externals-libarchive3.3.2-0-1.0-1.x86_64.rpm                    | 1.7 MB  00:00:03   
 
−
(5/8): irods-externals-zeromq4-14.1.3-0-1.0-1.x86_64.rpm                    | 549 kB  00:00:01   
 
−
(6/8): irods-icommands-4.2.7-1.x86_64.rpm                                    | 526 kB  00:00:01   
 
−
(7/8): irods-externals-boost1.60.0-0-1.0-1.x86_64.rpm                        |  13 MB  00:00:16   
 
−
(8/8): irods-runtime-4.2.7-1.x86_64.rpm                                      | 3.6 MB  00:00:08   
 
−
----------------------------------------------------------------------------------------------------
 
−
Total                                                              1.0 MB/s |  21 MB  00:00:20   
 
−
Running transaction check
 
−
Running transaction test
 
−
Transaction test succeeded
 
−
Running transaction
 
−
  Installing : irods-externals-avro1.7.7-0-1.0-1.x86_64                                        1/8
 
−
  Installing : irods-externals-boost1.60.0-0-1.0-1.x86_64                                      2/8
 
−
  Installing : irods-externals-zeromq4-14.1.3-0-1.0-1.x86_64                                    3/8
 
−
  Installing : irods-externals-libarchive3.3.2-0-1.0-1.x86_64                                  4/8
 
−
  Installing : irods-externals-jansson2.7-0-1.0-1.x86_64                                        5/8
 
−
  Installing : irods-externals-clang-runtime3.8-0-1.0-1.x86_64                                  6/8
 
−
  Installing : irods-runtime-4.2.7-1.x86_64                                                    7/8
 
−
  Installing : irods-icommands-4.2.7-1.x86_64                                                  8/8
 
−
  Verifying  : irods-externals-clang-runtime3.8-0-1.0-1.x86_64                                  1/8
 
−
  Verifying  : irods-externals-jansson2.7-0-1.0-1.x86_64                                        2/8
 
−
  Verifying  : irods-externals-libarchive3.3.2-0-1.0-1.x86_64                                  3/8
 
−
  Verifying  : irods-externals-zeromq4-14.1.3-0-1.0-1.x86_64                                    4/8
 
−
  Verifying  : irods-externals-boost1.60.0-0-1.0-1.x86_64                                      5/8
 
−
  Verifying  : irods-icommands-4.2.7-1.x86_64                                                  6/8
 
−
  Verifying  : irods-externals-avro1.7.7-0-1.0-1.x86_64                                        7/8
 
−
  Verifying  : irods-runtime-4.2.7-1.x86_64                                                    8/8
 
−
 
−
Installed:
 
−
  irods-icommands.x86_64 0:4.2.7-1                                                                 
 
−
 
−
Dependency Installed:
 
−
  irods-externals-avro1.7.7-0.x86_64 0:1.0-1        irods-externals-boost1.60.0-0.x86_64 0:1.0-1 
 
−
  irods-externals-clang-runtime3.8-0.x86_64 0:1.0-1 irods-externals-jansson2.7-0.x86_64 0:1.0-1   
 
−
  irods-externals-libarchive3.3.2-0.x86_64 0:1.0-1  irods-externals-zeromq4-14.1.3-0.x86_64 0:1.0-1
 
−
  irods-runtime.x86_64 0:4.2.7-1                 
 
  
−
Complete!
 
−
[vitlacil@localhost ~]$
 
−
[vitlacil@localhost ~]$
 
−
[vitlacil@localhost ~]$
 
−
[vitlacil@localhost ~]$
 
−
[vitlacil@localhost ~]$ ils
 
−
ERROR: environment_properties::capture: missing environment file. should be at [/home/vitlacil/.irods/irods_environment.json]
 
−
ERROR: _rcConnect: setRhostInfo error, IRODS_HOST is probably not set correctly status = -302000 USER_RODS_HOST_EMPTY
 
−
[vitlacil@localhost ~]$ ls ~/.
 
−
Desktop  Documents  Downloads  Music  Pictures  Public  Templates  Videos
 
−
[vitlacil@localhost ~]$ ls ~/
 
−
Desktop  Documents  Downloads  Music  Pictures  Public  Templates  Videos
 
−
[vitlacil@localhost ~]$ ls ~/.
 
−
Desktop  Documents  Downloads  Music  Pictures  Public  Templates  Videos
 
−
[vitlacil@localhost ~]$ ls -a ~/.
 
−
.              .bash_logout  .cache  Desktop    .esd_auth      .mozilla  Public
 
−
..            .bash_profile  .config  Documents  .ICEauthority  Music    Templates
 
−
.bash_history  .bashrc        .dbus    Downloads  .local        Pictures  Videos
 
−
[vitlacil@localhost ~]$ i
 
−
Display all 152 possibilities? (y or n)
 
−
i386                      imsettings-info          iprsos
 
−
iadmin                    imsettings-list          iprupdate
 
−
iapitest                  imsettings-reload        ips
 
−
ibun                      imsettings-switch        ipsec
 
−
ibus                      imv                      ipset
 
−
ibus-daemon              in                        iptables
 
−
ibus-setup                indent                    iptables-restore
 
−
ibus-table-createdb      index_dump                iptables-save
 
−
icd                      info                      iptables-xml
 
−
iceauth                  infocmp                  iptc
 
−
icedax                    infokey                  iptunnel
 
−
ichksum                  infotocap                iput
 
−
ichmod                    init                      ipwd
 
−
iclienthints              insmod                    iqdel
 
−
iconv                    install                  iqmod
 
−
iconvconfig              install-info              iqstat
 
−
iconvconfig.x86_64        installkernel            iquest
 
−
icp                      install-printerdriver    iquota
 
−
id                        instperf                  ireg
 
−
ident                    intel-microcode2ucode    irepl
 
−
idiag-socket-details      interdiff                irm
 
−
idn                      intltool-extract          irmdir
 
−
iecset                    intltoolize              irmtrash
 
−
ienv                      intltool-merge            irods-grid
 
−
ierror                    intltool-prepare          irqbalance
 
−
iexecmd                  intltool-update          irsync
 
−
iexit                    ionice                    irule
 
−
if                        iostat                    iscan
 
−
ifcfg                    ip                        iscsiadm
 
−
ifconfig                  ip6tables                iscsid
 
−
ifdown                    ip6tables-restore        iscsi-iname
 
−
ifenslave                ip6tables-save            iscsistart
 
−
ifnames                  ipa                      iscsiuio
 
−
ifsck                    ipa-certupdate            isdv4-serial-inputattach
 
−
ifstat                    ipa-client-automount      isodebug
 
−
ifup                      ipa-client-install        isodump
 
−
igawk                    ipa-getcert              isoinfo
 
−
iget                      ipa-getkeytab            iso-info
 
−
igetwild                  ipa-join                  iso-read
 
−
igroupadmin              ipa-rmkeytab              isosize
 
−
ihelp                    ipasswd                  isovfy
 
−
iinit                    ipcalc                    isysmeta
 
−
ijsgutenprint.5.2        ipcmk                    iticket
 
−
ilocate                  ipcrm                    itrim
 
−
ils                      ipcs                      itweb-settings
 
−
ilsresc                  iphybun                  itweb-settings.itweb
 
−
imcoll                    iphymv                    iuserinfo
 
−
imeta                    ipmaddr                  iw
 
−
imiscsvrinfo              iprconfig                ixmsg
 
−
imkdir                    iprdump                  izonereport
 
−
implantisomd5            iprinit                 
 
−
[vitlacil@localhost ~]$ i
 
  
−
bash: i: command not found...
 
−
[vitlacil@localhost ~]$
 
 
[vitlacil@localhost ~]$  
 
[vitlacil@localhost ~]$  
 
[vitlacil@localhost ~]$  
 
[vitlacil@localhost ~]$  

Revision as of 12:52, 6 May 2020

Here is an example of iRODS iCommands installation on CentOS 7, from iRODS repository

Install the public key and add the repository:

[vitlacil@localhost ~]$ sudo rpm --import https://packages.irods.org/irods-signing-key.asc
[sudo] password for vitlacil: *************************
[vitlacil@localhost ~]$ wget -qO - https://packages.irods.org/renci-irods.yum.repo | sudo tee /etc/yum.repos.d/renci-irods.yum.repo
   [renci-irods]
    name=RENCI iRODS Repository
    baseurl=https://packages.irods.org/yum/pool/centos$releasever/$basearch
    enabled=1
    gpgcheck=1
    repo_gpgcheck=1
    gpgkey=https://packages.irods.org/irods-signing-key.asc
[vitlacil@localhost ~]$

List available packages

[vitlacil@localhost ~]$ sudo yum search irods 
Loaded plugins: fastestmirror, langpacks 
Loading mirror speeds from cached hostfile
 * base: mirror.hosthink.net
 * extras: mirror.hosthink.net
 * updates: mirror.hosthink.net
renci-irods/7/x86_64/signature                                               |  819 B  00:00:00      
Retrieving key from https://packages.irods.org/irods-signing-key.asc
Importing GPG key 0xACF9B42B:
 Userid     : "iRODS Consortium <info@irods.org>"
 Fingerprint: 9014 ff9f 75c6 6c77 1f1c b574 bd92 5dbd acf9 b42b
 From       : https://packages.irods.org/irods-signing-key.asc
Is this ok [y/N]: y
renci-irods/7/x86_64/signature                                               | 2.9 kB  00:00:04 !!! 
renci-irods/7/x86_64/primary_db                                              |  63 kB  00:00:01      
======================================== N/S matched: irods ========================================
irods-externals-autoconf5ad3567c-0.x86_64 : iRODS Build Dependency
irods-externals-avro1.7.7-0.x86_64 : iRODS Build Dependency
irods-externals-avro1.8.2-0.x86_64 : iRODS Build Dependency
irods-externals-avro1.9.0-0.x86_64 : iRODS Build Dependency
irods-externals-aws-sdk-cpp1.4.89-0.x86_64 : iRODS Build Dependency
irods-externals-aws-sdk-cpp1.4.89-1.x86_64 : iRODS Build Dependency
irods-externals-boost1.60.0-0.x86_64 : iRODS Build Dependency
irods-externals-boost1.67.0-0.x86_64 : iRODS Build Dependency
irods-externals-catch22.3.0-0.x86_64 : iRODS Build Dependency
irods-externals-clang-runtime3.8-0.x86_64 : iRODS Build Dependency
irods-externals-clang-runtime6.0-0.x86_64 : iRODS Build Dependency
irods-externals-clang3.8-0.x86_64 : iRODS Build Dependency
irods-externals-clang6.0-0.x86_64 : iRODS Build Dependency 
irods-externals-cmake3.11.4-0.x86_64 : iRODS Build Dependency
irods-externals-cmake3.5.2-0.x86_64 : iRODS Build Dependency
irods-externals-cppzmq4.1-0.x86_64 : iRODS Build Dependency
irods-externals-cppzmq4.2.3-0.x86_64 : iRODS Build Dependency
irods-externals-cpr1.3.0-0.x86_64 : iRODS Build Dependency
irods-externals-cpr1.3.0-1.x86_64 : iRODS Build Dependency
irods-externals-elasticlient0.1.0-0.x86_64 : iRODS Build Dependency
irods-externals-elasticlient0.1.0-1.x86_64 : iRODS Build Dependency
irods-externals-epm4.2-0.x86_64 : iRODS Build Dependency
irods-externals-fmt6.1.2-0.x86_64 : iRODS Build Dependency
irods-externals-fmt6.1.2-1.x86_64 : iRODS Build Dependency
irods-externals-imagemagick7.0.3-0.x86_64 : iRODS Build Dependency
irods-externals-imagemagick7.0.8-0.x86_64 : iRODS Build Dependency
irods-externals-jansson2.7-0.x86_64 : iRODS Build Dependency
irods-externals-json3.0.1-0.x86_64 : iRODS Build Dependency
irods-externals-json3.1.2-0.x86_64 : iRODS Build Dependency
irods-externals-json3.7.3-0.x86_64 : iRODS Build Dependency 
irods-externals-libarchive3.1.2-0.x86_64 : iRODS Build Dependency
irods-externals-libarchive3.3.2-0.x86_64 : iRODS Build Dependency
irods-externals-libarchive3.3.2-1.x86_64 : iRODS Build Dependency
irods-externals-libs359b62371-0.x86_64 : iRODS Build Dependency 
irods-externals-libs3a30e55e8-0.x86_64 : iRODS Build Dependency
irods-externals-libs3a30e55e8-1.x86_64 : iRODS Build Dependency
irods-externals-libs3f6a2098e-0.x86_64 : iRODS Build Dependency
irods-externals-mungefs1.0.2-0.x86_64 : iRODS Build Dependency 
irods-externals-mungefs1.0.3-0.x86_64 : iRODS Build Dependency
irods-externals-nanodbc2.13.0-0.x86_64 : iRODS Build Dependency
irods-externals-qpid-with-proton0.34-0.x86_64 : iRODS Build Dependency 
irods-externals-qpid-with-proton0.34-1.x86_64 : iRODS Build Dependency
irods-externals-redis4.0.10-0.x86_64 : iRODS Build Dependency 
irods-externals-redis4.0.8-0.x86_64 : iRODS Build Dependency
irods-externals-spdlog0.17.0-0.x86_64 : iRODS Build Dependency 
irods-externals-spdlog1.5.0-0.x86_64 : iRODS Build Dependency
irods-externals-spdlog1.5.0-1.x86_64 : iRODS Build Dependency
irods-externals-zeromq4-14.1.3-0.x86_64 : iRODS Build Dependency
irods-externals-zeromq4-14.1.6-0.x86_64 : iRODS Build Dependency
irods-auth-plugin-gsi.x86_64 : The integrated Rule-Oriented Data System 
irods-auth-plugin-krb.x86_64 : The integrated Rule-Oriented Data System
irods-database-plugin-mysql.x86_64 : The integrated Rule-Oriented Data System 
irods-database-plugin-oracle.x86_64 : The integrated Rule-Oriented Data System 
irods-database-plugin-postgres.x86_64 : The integrated Rule-Oriented Data System
irods-devel.x86_64 : The integrated Rule-Oriented Data System
irods-icommands.x86_64 : The integrated Rule-Oriented Data System
irods-microservice-plugins-curl.x86_64 : The integrated Rule-Oriented Data System
irods-resource-plugin-s3.x86_64 : The integrated Rule-Oriented Data System
irods-rule-engine-plugin-apply-access-time.x86_64 : The integrated Rule-Oriented Data System
irods-rule-engine-plugin-audit-amqp.x86_64 : The integrated Rule-Oriented Data System
irods-rule-engine-plugin-data-movement.x86_64 : The integrated Rule-Oriented Data System 
irods-rule-engine-plugin-data-replication.x86_64 : The integrated Rule-Oriented Data System
irods-rule-engine-plugin-data-verification.x86_64 : The integrated Rule-Oriented Data System 
irods-rule-engine-plugin-python.x86_64 : The integrated Rule-Oriented Data System
irods-rule-engine-plugin-storage-tiering.x86_64 : The integrated Rule-Oriented Data System
irods-rule-engine-plugin-tiered-storage.x86_64 : The integrated Rule-Oriented Data System
irods-rule-engine-plugin-unified-storage-tiering.x86_64 : The integrated Rule-Oriented Data System
irods-rule-engine-plugin-update-collection-mtime.x86_64 : The integrated Rule-Oriented Data System
irods-runtime.x86_64 : The integrated Rule-Oriented Data System
irods-server.x86_64 : The integrated Rule-Oriented Data System
irods_rule_engine_plugin-apply_access_time.x86_64 : The integrated Rule-Oriented Data System
irods_rule_engine_plugin-data_movement.x86_64 : The integrated Rule-Oriented Data System
irods_rule_engine_plugin-data_replication.x86_64 : The integrated Rule-Oriented Data System
irods_rule_engine_plugin-data_verification.x86_64 : The integrated Rule-Oriented Data System
irods_rule_engine_plugin-storage_tiering.x86_64 : The integrated Rule-Oriented Data System
irods_rule_engine_plugin-unified_storage_tiering.x86_64 : The integrated Rule-Oriented Data System

  Name and summary matches only, use "search all" for everything.

[vitlacil@localhost ~]$

Install additional repositories needed for Python dependencies

[vitlacil@localhost ~]$ sudo yum install epel-release
   Loaded plugins: fastestmirror, langpacks
   Loading mirror speeds from cached hostfile
 * base: mirror.hosthink.net
 * extras: mirror.hosthink.net
 * updates: mirror.hosthink.net 
Resolving Dependencies 
--> Running transaction check
---> Package epel-release.noarch 0:7-11 will be installed
--> Finished Dependency Resolution

Dependencies Resolved

====================================================================================================
 Package                     Arch                  Version              Repository             Size
====================================================================================================
Installing:
 epel-release                noarch                7-11                 extras                 15 k

Transaction Summary
====================================================================================================
Install  1 Package

Total download size: 15 k
Installed size: 24 k
Is this ok [y/d/N]: y
Downloading packages:
epel-release-7-11.noarch.rpm                                                 |  15 kB  00:00:00     
Running transaction check
Running transaction test
Transaction test succeeded
Running transaction
  Installing : epel-release-7-11.noarch                                                         1/1 
  Verifying  : epel-release-7-11.noarch                                                         1/1 

Installed:
  epel-release.noarch 0:7-11                                                                        

Complete!

... and Python dependencies

[vitlacil@localhost ~]$ sudo yum install python-psutil python-jsonschema
Loaded plugins: fastestmirror, langpacks
Loading mirror speeds from cached hostfile
epel/x86_64/metalink                                                         |  24 kB  00:00:00     
 * base: mirror.zetup.net
 * epel: mirror.zetup.net
 * extras: mirror.zetup.net
 * updates: mirror.zetup.net
epel                                                                         | 4.7 kB  00:00:00     
(1/3): epel/x86_64/group_gz                                                  |  95 kB  00:00:00     
(2/3): epel/x86_64/updateinfo                                                | 1.0 MB  00:00:00     
(3/3): epel/x86_64/primary_db                                                | 6.8 MB  00:00:00     
Resolving Dependencies
--> Running transaction check
---> Package python2-jsonschema.noarch 0:2.5.1-4.el7 will be installed
--> Processing Dependency: python-repoze-lru for package: python2-jsonschema-2.5.1-4.el7.noarch
---> Package python2-psutil.x86_64 0:5.6.7-1.el7 will be installed
--> Running transaction check
---> Package python-repoze-lru.noarch 0:0.4-3.el7 will be installed
--> Finished Dependency Resolution

Dependencies Resolved
 
====================================================================================================
 Package                        Arch               Version                   Repository        Size
====================================================================================================
Installing:
 python2-jsonschema             noarch             2.5.1-4.el7               epel              75 k
 python2-psutil                 x86_64             5.6.7-1.el7               epel             399 k
Installing for dependencies:
 python-repoze-lru              noarch             0.4-3.el7                 epel              13 k

Transaction Summary
====================================================================================================
Install  2 Packages (+1 Dependent package)

Total download size: 487 k
Installed size: 2.6 M
Is this ok [y/d/N]: y
Downloading packages:
warning: /var/cache/yum/x86_64/7/epel/packages/python-repoze-lru-0.4-3.el7.noarch.rpm: Header V3 RSA/SHA256 Signature, key ID 352c64e5: NOKEY
Public key for python-repoze-lru-0.4-3.el7.noarch.rpm is not installed
(1/3): python-repoze-lru-0.4-3.el7.noarch.rpm                                |  13 kB  00:00:00     
(2/3): python2-jsonschema-2.5.1-4.el7.noarch.rpm                             |  75 kB  00:00:00     
(3/3): python2-psutil-5.6.7-1.el7.x86_64.rpm                                 | 399 kB  00:00:00     
----------------------------------------------------------------------------------------------------
Total                                                               1.3 MB/s | 487 kB  00:00:00     
Retrieving key from file:///etc/pki/rpm-gpg/RPM-GPG-KEY-EPEL-7
Importing GPG key 0x352C64E5:
 Userid     : "Fedora EPEL (7) <epel@fedoraproject.org>"
 Fingerprint: 91e9 7d7c 4a5e 96f1 7f3e 888f 6a2f aea2 352c 64e5
 Package    : epel-release-7-11.noarch (@extras)
 From       : /etc/pki/rpm-gpg/RPM-GPG-KEY-EPEL-7
Is this ok [y/N]: y
Running transaction check
Running transaction test
Transaction test succeeded
Running transaction
  Installing : python-repoze-lru-0.4-3.el7.noarch                                               1/3 
  Installing : python2-jsonschema-2.5.1-4.el7.noarch                                            2/3 
  Installing : python2-psutil-5.6.7-1.el7.x86_64                                                3/3 
  Verifying  : python2-jsonschema-2.5.1-4.el7.noarch                                            1/3 
  Verifying  : python2-psutil-5.6.7-1.el7.x86_64                                                2/3 
  Verifying  : python-repoze-lru-0.4-3.el7.noarch                                               3/3 

Installed:
  python2-jsonschema.noarch 0:2.5.1-4.el7            python2-psutil.x86_64 0:5.6.7-1.el7           

Dependency Installed:
  python-repoze-lru.noarch 0:0.4-3.el7                                                              

Complete!
[vitlacil@localhost ~]$

Install iRODS iCommands

[vitlacil@localhost ~]$ sudo yum install irods-icommands
Loaded plugins: fastestmirror, langpacks
Loading mirror speeds from cached hostfile
 * base: mirrors.glesys.net
 * epel: mirrors.glesys.net
 * extras: mirrors.glesys.net
 * updates: mirrors.glesys.net
Resolving Dependencies
--> Running transaction check
---> Package irods-icommands.x86_64 0:4.2.7-1 will be installed
--> Processing Dependency: irods-runtime = 4.2.7 for package: irods-icommands-4.2.7-1.x86_64
--> Processing Dependency: irods-externals-avro1.7.7-0 for package: irods-icommands-4.2.7-1.x86_64
--> Processing Dependency: irods-externals-jansson2.7-0 for package: irods-icommands-4.2.7-1.x86_64
--> Processing Dependency: irods-externals-clang-runtime3.8-0 for package: irods-icommands-4.2.7-1.x86_64
--> Processing Dependency: irods-externals-zeromq4-14.1.3-0 for package: irods-icommands-4.2.7-1.x86_64
--> Processing Dependency: irods-externals-boost1.60.0-0 for package: irods-icommands-4.2.7-1.x86_64
--> Processing Dependency: irods-externals-libarchive3.3.2-0 for package: irods-icommands-4.2.7-1.x86_64
--> Running transaction check
---> Package irods-externals-avro1.7.7-0.x86_64 0:1.0-1 will be installed
---> Package irods-externals-boost1.60.0-0.x86_64 0:1.0-1 will be installed
---> Package irods-externals-clang-runtime3.8-0.x86_64 0:1.0-1 will be installed
---> Package irods-externals-jansson2.7-0.x86_64 0:1.0-1 will be installed
---> Package irods-externals-libarchive3.3.2-0.x86_64 0:1.0-1 will be installed
---> Package irods-externals-zeromq4-14.1.3-0.x86_64 0:1.0-1 will be installed
---> Package irods-runtime.x86_64 0:4.2.7-1 will be installed
--> Finished Dependency Resolution

Dependencies Resolved
 
====================================================================================================
 Package                                   Arch          Version           Repository          Size
====================================================================================================
Installing:
 irods-icommands                           x86_64        4.2.7-1           renci-irods        526 k
Installing for dependencies:
 irods-externals-avro1.7.7-0               x86_64        1.0-1             renci-irods        1.5 M
 irods-externals-boost1.60.0-0             x86_64        1.0-1             renci-irods         13 M
 irods-externals-clang-runtime3.8-0        x86_64        1.0-1             renci-irods        347 k
 irods-externals-jansson2.7-0              x86_64        1.0-1             renci-irods        165 k
 irods-externals-libarchive3.3.2-0         x86_64        1.0-1             renci-irods        1.7 M
 irods-externals-zeromq4-14.1.3-0          x86_64        1.0-1             renci-irods        549 k
 irods-runtime                             x86_64        4.2.7-1           renci-irods        3.6 M 

Transaction Summary
====================================================================================================
Install  1 Package (+7 Dependent packages)

Total download size: 21 M
Installed size: 158 M
Is this ok [y/d/N]: y 
Downloading packages:
(1/8): irods-externals-avro1.7.7-0-1.0-1.x86_64.rpm                          | 1.5 MB  00:00:03     
(2/8): irods-externals-clang-runtime3.8-0-1.0-1.x86_64.rpm                   | 347 kB  00:00:00     
(3/8): irods-externals-jansson2.7-0-1.0-1.x86_64.rpm                         | 165 kB  00:00:00     
(4/8): irods-externals-libarchive3.3.2-0-1.0-1.x86_64.rpm                    | 1.7 MB  00:00:03     
(5/8): irods-externals-zeromq4-14.1.3-0-1.0-1.x86_64.rpm                     | 549 kB  00:00:01     
(6/8): irods-icommands-4.2.7-1.x86_64.rpm                                    | 526 kB  00:00:01     
(7/8): irods-externals-boost1.60.0-0-1.0-1.x86_64.rpm                        |  13 MB  00:00:16     
(8/8): irods-runtime-4.2.7-1.x86_64.rpm                                      | 3.6 MB  00:00:08     
----------------------------------------------------------------------------------------------------
Total                                                               1.0 MB/s |  21 MB  00:00:20      
Running transaction check 
Running transaction test
Transaction test succeeded
Running transaction
 Installing : irods-externals-avro1.7.7-0-1.0-1.x86_64                                         1/8 
  Installing : irods-externals-boost1.60.0-0-1.0-1.x86_64                                       2/8 
  Installing : irods-externals-zeromq4-14.1.3-0-1.0-1.x86_64                                    3/8 
  Installing : irods-externals-libarchive3.3.2-0-1.0-1.x86_64                                   4/8 
  Installing : irods-externals-jansson2.7-0-1.0-1.x86_64                                        5/8 
  Installing : irods-externals-clang-runtime3.8-0-1.0-1.x86_64                                  6/8 
  Installing : irods-runtime-4.2.7-1.x86_64                                                     7/8 
  Installing : irods-icommands-4.2.7-1.x86_64                                                   8/8 
  Verifying  : irods-externals-clang-runtime3.8-0-1.0-1.x86_64                                  1/8 
  Verifying  : irods-externals-jansson2.7-0-1.0-1.x86_64                                        2/8 
  Verifying  : irods-externals-libarchive3.3.2-0-1.0-1.x86_64                                   3/8 
  Verifying  : irods-externals-zeromq4-14.1.3-0-1.0-1.x86_64                                    4/8 
  Verifying  : irods-externals-boost1.60.0-0-1.0-1.x86_64                                       5/8 
  Verifying  : irods-icommands-4.2.7-1.x86_64                                                   6/8 
  Verifying  : irods-externals-avro1.7.7-0-1.0-1.x86_64                                         7/8 
  Verifying  : irods-runtime-4.2.7-1.x86_64                                                     8/8 

Installed:
  irods-icommands.x86_64 0:4.2.7-1                                                                  

Dependency Installed:
  irods-externals-avro1.7.7-0.x86_64 0:1.0-1        irods-externals-boost1.60.0-0.x86_64 0:1.0-1   
  irods-externals-clang-runtime3.8-0.x86_64 0:1.0-1 irods-externals-jansson2.7-0.x86_64 0:1.0-1    
  irods-externals-libarchive3.3.2-0.x86_64 0:1.0-1  irods-externals-zeromq4-14.1.3-0.x86_64 0:1.0-1
  irods-runtime.x86_64 0:4.2.7-1                   

Complete!
[vitlacil@localhost ~]$

[vitlacil@localhost ~]$


[vitlacil@localhost ~]$ [vitlacil@localhost ~]$ [vitlacil@localhost ~]$ [vitlacil@localhost ~]$ [vitlacil@localhost ~]$ [vitlacil@localhost ~]$ [vitlacil@localhost ~]$ [vitlacil@localhost ~]$ [vitlacil@localhost ~]$ [vitlacil@localhost ~]$ [vitlacil@localhost ~]$ [vitlacil@localhost ~]$ [vitlacil@localhost ~]$ [vitlacil@localhost ~]$ [vitlacil@localhost ~]$ [vitlacil@localhost ~]$ [vitlacil@localhost ~]$ [vitlacil@localhost ~]$ [vitlacil@localhost ~]$ [vitlacil@localhost ~]$ [vitlacil@localhost ~]$ [vitlacil@localhost ~]$ [vitlacil@localhost ~]$ [vitlacil@localhost ~]$ [vitlacil@localhost ~]$ [vitlacil@localhost ~]$ [vitlacil@localhost ~]$ [vitlacil@localhost ~]$ [vitlacil@localhost ~]$ [vitlacil@localhost ~]$ ienv 

ERROR: environment_properties::capture: missing environment file. should be at [/home/vitlacil/.irods/irods_environment.json]

irods_version - 4.2.7 [vitlacil@localhost ~]$ iinit 

ERROR: environment_properties::capture: missing environment file. should be at [/home/vitlacil/.irods/irods_environment.json]

One or more fields in your iRODS environment file (irods_environment.json) are missing; please enter them. Enter the host name (DNS) of the server to connect to: Enter the port number: Enter your irods user name: Enter your irods zone: Those values will be added to your environment file (for use by other iCommands) if the login succeeds.

Enter your current iRODS password: 

ERROR: Save Password failure status = -909000 NO_PASSWORD_ENTERED

[vitlacil@localhost ~]$ [vitlacil@localhost ~]$ [vitlacil@localhost ~]$ [vitlacil@localhost ~]$ [vitlacil@localhost ~]$ [vitlacil@localhost ~]$ ienv 

ERROR: environment_properties::capture: missing environment file. should be at [/home/vitlacil/.irods/irods_environment.json]

irods_version - 4.2.7 [vitlacil@localhost ~]$ vi /home/vitlacil/.irods/irods_environment.json [vitlacil@localhost ~]$ [vitlacil@localhost ~]$ [vitlacil@localhost ~]$ iinit 

ERROR: iRODS Exception:
   file: /irods/lib/core/src/irods_environment_properties.cpp
   function: void irods::environment_properties::capture_json(const std::string &)
   line: 113
   code: -1 (Unknown iRODS error)
   message:
       [-]	/irods/lib/core/src/irods_configuration_parser.cpp:92:irods::error irods::configuration_parser::load_json_object(const std::string &) :  status [Unknown iRODS error]  errno [Operation not permitted] -- message [failed to load file [/home/vitlacil/.irods/irods_environment.json] json error [unexpected newline]]


stack trace:

Dumping stack trace <0> Offset: 0x65 Address: 0x7f3ec8b55a25 irods::exception::exception(long, std::__1::basic_string<char, std::__1::char_traits<char>, std::__1::allocator<char> > const&, std::__1::basic_string<char, std::__1::char_traits<char>, std::__1::allocator<char> > const&, unsigned int, std::__1::basic_string<char, std::__1::char_traits<char>, std::__1::allocator<char> > const&) <1> Offset: 0xf2 Address: 0x7f3ec8b526f2 irods::environment_properties::capture_json(std::__1::basic_string<char, std::__1::char_traits<char>, std::__1::allocator<char> > const&) <2> Offset: 0xbb Address: 0x7f3ec8b5239b irods::environment_properties::capture() <3> Offset: 0x33 Address: 0x7f3ec8b52253 irods::environment_properties::instance() <4> Offset: Address: 0x7f3ec8b3e690 /lib/libirods_common.so.4.2.7(+0x62690) [0x7f3ec8b3e690] <5> Offset: Address: 0x7f3ec8b3d81a /lib/libirods_common.so.4.2.7(getRodsEnvFromFile+0x5a) [0x7f3ec8b3d81a] <6> Offset: Address: 0x7f3ec8b3d70b /lib/libirods_common.so.4.2.7(_getRodsEnv+0x1b) [0x7f3ec8b3d70b] <7> Offset: Address: 0x7f3ec8b3d6e0 /lib/libirods_common.so.4.2.7(getRodsEnv+0x10) [0x7f3ec8b3d6e0] <8> Offset: Address: 0x40e3db iinit() [0x40e3db] <9> Offset: Address: 0x7f3ec7142555 /lib64/libc.so.6(__libc_start_main+0xf5) [0x7f3ec7142555] <10> Offset: Address: 0x40e1d8 iinit() [0x40e1d8]


One or more fields in your iRODS environment file (irods_environment.json) are missing; please enter them. Enter the host name (DNS) of the server to connect to: :q Enter the port number: Enter your irods user name: Enter your irods zone: Those values will be added to your environment file (for use by other iCommands) if the login succeeds.

Enter your current iRODS password: 

ERROR: Save Password failure status = -909000 NO_PASSWORD_ENTERED

[vitlacil@localhost ~]$ [vitlacil@localhost ~]$ vi /home/vitlacil/.irods/irods_environment.json [vitlacil@localhost ~]$ iinit 

ERROR: iRODS Exception:
   file: /irods/lib/core/src/irods_environment_properties.cpp
   function: void irods::environment_properties::capture_json(const std::string &)
   line: 113
   code: -1 (Unknown iRODS error)
   message:
       [-]	/irods/lib/core/src/irods_configuration_parser.cpp:92:irods::error irods::configuration_parser::load_json_object(const std::string &) :  status [Unknown iRODS error]  errno [Operation not permitted] -- message [failed to load file [/home/vitlacil/.irods/irods_environment.json] json error [unexpected newline]]


stack trace:

Dumping stack trace <0> Offset: 0x65 Address: 0x7fc3816dea25 irods::exception::exception(long, std::__1::basic_string<char, std::__1::char_traits<char>, std::__1::allocator<char> > const&, std::__1::basic_string<char, std::__1::char_traits<char>, std::__1::allocator<char> > const&, unsigned int, std::__1::basic_string<char, std::__1::char_traits<char>, std::__1::allocator<char> > const&) <1> Offset: 0xf2 Address: 0x7fc3816db6f2 irods::environment_properties::capture_json(std::__1::basic_string<char, std::__1::char_traits<char>, std::__1::allocator<char> > const&) <2> Offset: 0xbb Address: 0x7fc3816db39b irods::environment_properties::capture() <3> Offset: 0x33 Address: 0x7fc3816db253 irods::environment_properties::instance() <4> Offset: Address: 0x7fc3816c7690 /lib/libirods_common.so.4.2.7(+0x62690) [0x7fc3816c7690] <5> Offset: Address: 0x7fc3816c681a /lib/libirods_common.so.4.2.7(getRodsEnvFromFile+0x5a) [0x7fc3816c681a] <6> Offset: Address: 0x7fc3816c670b /lib/libirods_common.so.4.2.7(_getRodsEnv+0x1b) [0x7fc3816c670b] <7> Offset: Address: 0x7fc3816c66e0 /lib/libirods_common.so.4.2.7(getRodsEnv+0x10) [0x7fc3816c66e0] <8> Offset: Address: 0x40e3db iinit() [0x40e3db] <9> Offset: Address: 0x7fc37fccb555 /lib64/libc.so.6(__libc_start_main+0xf5) [0x7fc37fccb555] <10> Offset: Address: 0x40e1d8 iinit() [0x40e1d8]


One or more fields in your iRODS environment file (irods_environment.json) are missing; please enter them. Enter the host name (DNS) of the server to connect to: irods-login.swestore.se Enter the port number: 2432 Enter your irods user name: s_dejvi Enter your irods zone: snic.se Those values will be added to your environment file (for use by other iCommands) if the login succeeds.

Enter your current iRODS password: [-] /irods/plugins/auth/native/libnative.cpp:342:irods::error native_auth_client_response(irods::plugin_context &, rcComm_t *) : status [CAT_INVALID_AUTHENTICATION] errno [] -- message [Call to rcAuthResponseFailed.] 

failed with error -826000 CAT_INVALID_AUTHENTICATION

[vitlacil@localhost ~]$ vi /home/vitlacil/.irods/irods_environment.json [vitlacil@localhost ~]$ vi /home/vitlacil/.irods/irods_environment.json [vitlacil@localhost ~]$ ienv 

ERROR: iRODS Exception:
   file: /irods/lib/core/src/irods_environment_properties.cpp
   function: void irods::environment_properties::capture_json(const std::string &)
   line: 113
   code: -1 (Unknown iRODS error)
   message:
       [-]	/irods/lib/core/src/irods_configuration_parser.cpp:92:irods::error irods::configuration_parser::load_json_object(const std::string &) :  status [Unknown iRODS error]  errno [Operation not permitted] -- message [failed to load file [/home/vitlacil/.irods/irods_environment.json] json error [unexpected newline]]


stack trace:

Dumping stack trace <0> Offset: 0x65 Address: 0x7fc5ae704a25 irods::exception::exception(long, std::__1::basic_string<char, std::__1::char_traits<char>, std::__1::allocator<char> > const&, std::__1::basic_string<char, std::__1::char_traits<char>, std::__1::allocator<char> > const&, unsigned int, std::__1::basic_string<char, std::__1::char_traits<char>, std::__1::allocator<char> > const&) <1> Offset: 0xf2 Address: 0x7fc5ae7016f2 irods::environment_properties::capture_json(std::__1::basic_string<char, std::__1::char_traits<char>, std::__1::allocator<char> > const&) <2> Offset: 0xbb Address: 0x7fc5ae70139b irods::environment_properties::capture() <3> Offset: 0x33 Address: 0x7fc5ae701253 irods::environment_properties::instance() <4> Offset: Address: 0x7fc5ae6ed9df /lib/libirods_common.so.4.2.7(printRodsEnv+0x1f) [0x7fc5ae6ed9df] <5> Offset: Address: 0x400b39 ienv() [0x400b39] <6> Offset: Address: 0x7fc5accf1555 /lib64/libc.so.6(__libc_start_main+0xf5) [0x7fc5accf1555] <7> Offset: Address: 0x400969 ienv() [0x400969]


irods_version - 4.2.7 [vitlacil@localhost ~]$ vi /home/vitlacil/.irods/irods_environment.json [vitlacil@localhost ~]$ ienv 

ERROR: iRODS Exception:
   file: /irods/lib/core/src/irods_environment_properties.cpp
   function: void irods::environment_properties::capture_json(const std::string &)
   line: 113
   code: -1 (Unknown iRODS error)
   message:
       [-]	/irods/lib/core/src/irods_configuration_parser.cpp:92:irods::error irods::configuration_parser::load_json_object(const std::string &) :  status [Unknown iRODS error]  errno [Operation not permitted] -- message [failed to load file [/home/vitlacil/.irods/irods_environment.json] json error [unexpected newline]]


stack trace:

Dumping stack trace <0> Offset: 0x65 Address: 0x7fae752d9a25 irods::exception::exception(long, std::__1::basic_string<char, std::__1::char_traits<char>, std::__1::allocator<char> > const&, std::__1::basic_string<char, std::__1::char_traits<char>, std::__1::allocator<char> > const&, unsigned int, std::__1::basic_string<char, std::__1::char_traits<char>, std::__1::allocator<char> > const&) <1> Offset: 0xf2 Address: 0x7fae752d66f2 irods::environment_properties::capture_json(std::__1::basic_string<char, std::__1::char_traits<char>, std::__1::allocator<char> > const&) <2> Offset: 0xbb Address: 0x7fae752d639b irods::environment_properties::capture() <3> Offset: 0x33 Address: 0x7fae752d6253 irods::environment_properties::instance() <4> Offset: Address: 0x7fae752c29df /lib/libirods_common.so.4.2.7(printRodsEnv+0x1f) [0x7fae752c29df] <5> Offset: Address: 0x400b39 ienv() [0x400b39] <6> Offset: Address: 0x7fae738c6555 /lib64/libc.so.6(__libc_start_main+0xf5) [0x7fae738c6555] <7> Offset: Address: 0x400969 ienv() [0x400969]


irods_version - 4.2.7 [vitlacil@localhost ~]$ [vitlacil@localhost ~]$ [vitlacil@localhost ~]$ vi /home/vitlacil/.irods/irods_environment.json [vitlacil@localhost ~]$ ienv 

ERROR: iRODS Exception:
   file: /irods/lib/core/src/irods_environment_properties.cpp
   function: void irods::environment_properties::capture_json(const std::string &)
   line: 113
   code: -1 (Unknown iRODS error)
   message:
       [-]	/irods/lib/core/src/irods_configuration_parser.cpp:92:irods::error irods::configuration_parser::load_json_object(const std::string &) :  status [Unknown iRODS error]  errno [Operation not permitted] -- message [failed to load file [/home/vitlacil/.irods/irods_environment.json] json error [unexpected newline]]


stack trace:

Dumping stack trace <0> Offset: 0x65 Address: 0x7f41b7ac6a25 irods::exception::exception(long, std::__1::basic_string<char, std::__1::char_traits<char>, std::__1::allocator<char> > const&, std::__1::basic_string<char, std::__1::char_traits<char>, std::__1::allocator<char> > const&, unsigned int, std::__1::basic_string<char, std::__1::char_traits<char>, std::__1::allocator<char> > const&) <1> Offset: 0xf2 Address: 0x7f41b7ac36f2 irods::environment_properties::capture_json(std::__1::basic_string<char, std::__1::char_traits<char>, std::__1::allocator<char> > const&) <2> Offset: 0xbb Address: 0x7f41b7ac339b irods::environment_properties::capture() <3> Offset: 0x33 Address: 0x7f41b7ac3253 irods::environment_properties::instance() <4> Offset: Address: 0x7f41b7aaf9df /lib/libirods_common.so.4.2.7(printRodsEnv+0x1f) [0x7f41b7aaf9df] <5> Offset: Address: 0x400b39 ienv() [0x400b39] <6> Offset: Address: 0x7f41b60b3555 /lib64/libc.so.6(__libc_start_main+0xf5) [0x7f41b60b3555] <7> Offset: Address: 0x400969 ienv() [0x400969]


irods_version - 4.2.7 [vitlacil@localhost ~]$ [vitlacil@localhost ~]$ [vitlacil@localhost ~]$ [vitlacil@localhost ~]$ [vitlacil@localhost ~]$ [vitlacil@localhost ~]$ [vitlacil@localhost ~]$ vi /home/vitlacil/.irods/irods_environment.json [vitlacil@localhost ~]$ ienv irods_version - 4.2.7 irods_server_control_plane_encryption_num_hash_rounds - 16 irods_host - irods-login.swestore.se irods_user_name - s_dejvi irods_zone_name - snic.se irods_transfer_buffer_size_for_parallel_transfer_in_megabytes - 4 schema_name - irods_environment irods_server_control_plane_encryption_algorithm - AES-256-CBC irods_match_hash_policy - compatible irods_encryption_num_hash_rounds - 16 irods_default_resource - pdc-gpfs irods_home - /snic.se/home/s_dejvi schema_version - v3 irods_encryption_salt_size - 8 irods_environment_file - /home/vitlacil/.irods/irods_environment.json irods_default_number_of_transfer_threads - 4 irods_cwd - /snic.se/home/s_dejvi irods_session_environment_file - /home/vitlacil/.irods/irods_environment.json.4792 irods_port - 2432 irods_encryption_algorithm - AES-256-CBC irods_server_control_plane_port - 1248 irods_server_control_plane_key - 32_byte_server_control_plane_key irods_client_server_negotiation - request_server_negotiation irods_encryption_key_size - 32 irods_client_server_policy - CS_NEG_REFUSE irods_default_hash_scheme - SHA256 irods_maximum_size_for_single_buffer_in_megabytes - 32 [vitlacil@localhost ~]$ [vitlacil@localhost ~]$ [vitlacil@localhost ~]$ [vitlacil@localhost ~]$ iinit Enter your current iRODS password: [-] /irods/plugins/auth/native/libnative.cpp:342:irods::error native_auth_client_response(irods::plugin_context &, rcComm_t *) : status [CAT_INVALID_AUTHENTICATION] errno [] -- message [Call to rcAuthResponseFailed.] 

failed with error -826000 CAT_INVALID_AUTHENTICATION

[vitlacil@localhost ~]$ iinit Enter your current iRODS password: [-] /irods/plugins/auth/native/libnative.cpp:342:irods::error native_auth_client_response(irods::plugin_context &, rcComm_t *) : status [CAT_INVALID_AUTHENTICATION] errno [] -- message [Call to rcAuthResponseFailed.] 

failed with error -826000 CAT_INVALID_AUTHENTICATION

[vitlacil@localhost ~]$ [vitlacil@localhost ~]$ [vitlacil@localhost ~]$ [vitlacil@localhost ~]$ [vitlacil@localhost ~]$ [vitlacil@localhost ~]$ iinit Enter your current iRODS password: [-] /irods/plugins/auth/native/libnative.cpp:342:irods::error native_auth_client_response(irods::plugin_context &, rcComm_t *) : status [CAT_INVALID_AUTHENTICATION] errno [] -- message [Call to rcAuthResponseFailed.] 

failed with error -826000 CAT_INVALID_AUTHENTICATION

[vitlacil@localhost ~]$ iinit Enter your current iRODS password: [-] /irods/plugins/auth/native/libnative.cpp:342:irods::error native_auth_client_response(irods::plugin_context &, rcComm_t *) : status [CAT_INVALID_AUTHENTICATION] errno [] -- message [Call to rcAuthResponseFailed.] 

failed with error -826000 CAT_INVALID_AUTHENTICATION

[vitlacil@localhost ~]$ vi /home/vitlacil/.irods/irods_environment.json [vitlacil@localhost ~]$ iinit Enter your current PAM password: [vitlacil@localhost ~]$ ils /snic.se/home/s_dejvi: 

 .DS_Store
 ._.DS_Store
 SISO.Certificate.pdf
 project_role_descriptions.docx
 worst-day-fosdem-2014.pdf
 C- /snic.se/home/s_dejvi/0 TiddlyWiki
 C- /snic.se/home/s_dejvi/0 reading
 C- /snic.se/home/s_dejvi/Dropbox
 C- /snic.se/home/s_dejvi/EOSC
 C- /snic.se/home/s_dejvi/EOSC-Hub Reporting
 C- /snic.se/home/s_dejvi/EUDAT
 C- /snic.se/home/s_dejvi/FAIR
 C- /snic.se/home/s_dejvi/FitSM
 C- /snic.se/home/s_dejvi/Googletakeout
 C- /snic.se/home/s_dejvi/Magazines
 C- /snic.se/home/s_dejvi/PIDs
 C- /snic.se/home/s_dejvi/Private
 C- /snic.se/home/s_dejvi/Public
 C- /snic.se/home/s_dejvi/SNIC ALL HANDS 2019
 C- /snic.se/home/s_dejvi/SNIC Storage
 C- /snic.se/home/s_dejvi/Security
 C- /snic.se/home/s_dejvi/WebDAV test
 C- /snic.se/home/s_dejvi/iRODS
 C- /snic.se/home/s_dejvi/nordic data services workshop da aggiungere in AFS
 C- /snic.se/home/s_dejvi/test.from.klemming

[vitlacil@localhost ~]$

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