Difference between revisions of "Application Experts"

From SNIC Documentation
Jump to: navigation, search
(Lilit Axner, PDC/KTH)
(Rossen Apostolov, PDC)
Line 77: Line 77:
*Working at PDC since 2010
*Working at PDC since 2010
*Ph.D. 2008 in Computational Biophysics
*Ph.D. 2008 in Computational Biophysics
*Working on [[Gromacs]] development
*Working on [[GROMACS|Gromacs]] development
*Keywords : Molecular Dynamics, Gromacs, GPGPU computing
*Keywords : Molecular Dynamics, Gromacs, GPGPU computing

Revision as of 12:20, 28 March 2011

Torben Rasmussen, NSC

Torben Rasmussen
  • Application expert in computational chemistry
  • Work at NSC since 2008
  • Handle user relations, general support, software installations, etc.
  • Ph.D. in 2001
  • Five years of postdoctoral experience in the field covering applications within organic chemistry, biochemistry, and life science
  • Have used Gaussian and Jaguar extensively
  • Experience with parametrization of molecular mechanics force fields

Chandan Basu, NSC

Chandan Basu
  • Ph.D in computational Physics
  • Working at NSC since 2009
  • Working on benchmarking, optimization, scaling issues
  • Working on EU projects, e.g., IS-ENES, PRACE and also with SMHI

Johan Raber, NSC

Johan Raber
  • E-science coordinator
  • Work at NSC for two years as a Systems Expert
  • Handle user relations, general support etc.
  • PhD in Biophysics in 2007 at Uppsala University
  • MSc in Molecular Biotechnology Engineering
  • Long experience using Gaussian
  • Experience using GROMACS and Gaussian for QM/MD simulations

Joel Hedlund, NSC

Joel Hedlund
  • Application expert in bioinformatics.
  • Work at NSC since 2011.
  • Ph.D. in 2010.
  • Main scientific work in the field of sequence analysis and bioinformatic protein family characterisation.
  • Have used HMMER, BLAST and MSA extensively.

Jonathan Vincent, PDC

[[image:|frame|left|Jonathan Vincent]]

  • Application expert
  • Work at PDC since 2009
  • Handle advanced user support, software installations, etc.
  • Ph.D. 2000 in Semiconductor Physics, Postdoctoral experience in semiconductor physics and classical and quantum dynamics
  • Working on Benchmarking, code optimisation
  • Keywords : Cray XT6, Cray XE6, MPI, Benchmarking, Optimisation

Rossen Apostolov, PDC

Rossen Apostolov
  • Application expert in Molecular Dynamics simulations
  • Working at PDC since 2010
  • Ph.D. 2008 in Computational Biophysics
  • Working on Gromacs development
  • Keywords : Molecular Dynamics, Gromacs, GPGPU computing

Lilit Axner, PDC/KTH

Lilit Axner
  • Application expert in Computational Fluid Dynamics as well as Project manager for EU projects
  • Works at PDC since 2010
  • Ph.D. in Computer Science (2007)
  • Previously worked at Dutch National Supercomputer Center (SARA)
  • Experience in Lattice Boltzmann method, domain decomposition, load balancing, performance benchmarking, parallelization, mesh generation.
  • Managing the following projects Prace, Deisa, ScalaLife
    • Assisting applicants of these projects