IRODS iCommands installation on CentOS 7
Here is an example of iRODS iCommands installation on CentOS 7, from iRODS repository.
Contents
Install the public key and add the repository
[vitlacil@localhost ~]$ sudo rpm --import https://packages.irods.org/irods-signing-key.asc [sudo] password for vitlacil: ************************* [vitlacil@localhost ~]$ wget -qO - https://packages.irods.org/renci-irods.yum.repo | sudo tee /etc/yum.repos.d/renci-irods.yum.repo [renci-irods] name=RENCI iRODS Repository baseurl=https://packages.irods.org/yum/pool/centos$releasever/$basearch enabled=1 gpgcheck=1 repo_gpgcheck=1 gpgkey=https://packages.irods.org/irods-signing-key.asc [vitlacil@localhost ~]$
List available packages
[vitlacil@localhost ~]$ sudo yum search irods Loaded plugins: fastestmirror, langpacks Loading mirror speeds from cached hostfile * base: mirror.hosthink.net * extras: mirror.hosthink.net * updates: mirror.hosthink.net renci-irods/7/x86_64/signature | 819 B 00:00:00 Retrieving key from https://packages.irods.org/irods-signing-key.asc Importing GPG key 0xACF9B42B: Userid : "iRODS Consortium <info@irods.org>" Fingerprint: 9014 ff9f 75c6 6c77 1f1c b574 bd92 5dbd acf9 b42b From : https://packages.irods.org/irods-signing-key.asc Is this ok [y/N]: y renci-irods/7/x86_64/signature | 2.9 kB 00:00:04 !!! renci-irods/7/x86_64/primary_db | 63 kB 00:00:01 ======================================== N/S matched: irods ======================================== irods-externals-autoconf5ad3567c-0.x86_64 : iRODS Build Dependency irods-externals-avro1.7.7-0.x86_64 : iRODS Build Dependency irods-externals-avro1.8.2-0.x86_64 : iRODS Build Dependency irods-externals-avro1.9.0-0.x86_64 : iRODS Build Dependency irods-externals-aws-sdk-cpp1.4.89-0.x86_64 : iRODS Build Dependency irods-externals-aws-sdk-cpp1.4.89-1.x86_64 : iRODS Build Dependency irods-externals-boost1.60.0-0.x86_64 : iRODS Build Dependency irods-externals-boost1.67.0-0.x86_64 : iRODS Build Dependency irods-externals-catch22.3.0-0.x86_64 : iRODS Build Dependency irods-externals-clang-runtime3.8-0.x86_64 : iRODS Build Dependency irods-externals-clang-runtime6.0-0.x86_64 : iRODS Build Dependency irods-externals-clang3.8-0.x86_64 : iRODS Build Dependency irods-externals-clang6.0-0.x86_64 : iRODS Build Dependency irods-externals-cmake3.11.4-0.x86_64 : iRODS Build Dependency irods-externals-cmake3.5.2-0.x86_64 : iRODS Build Dependency irods-externals-cppzmq4.1-0.x86_64 : iRODS Build Dependency irods-externals-cppzmq4.2.3-0.x86_64 : iRODS Build Dependency irods-externals-cpr1.3.0-0.x86_64 : iRODS Build Dependency irods-externals-cpr1.3.0-1.x86_64 : iRODS Build Dependency irods-externals-elasticlient0.1.0-0.x86_64 : iRODS Build Dependency irods-externals-elasticlient0.1.0-1.x86_64 : iRODS Build Dependency irods-externals-epm4.2-0.x86_64 : iRODS Build Dependency irods-externals-fmt6.1.2-0.x86_64 : iRODS Build Dependency irods-externals-fmt6.1.2-1.x86_64 : iRODS Build Dependency irods-externals-imagemagick7.0.3-0.x86_64 : iRODS Build Dependency irods-externals-imagemagick7.0.8-0.x86_64 : iRODS Build Dependency irods-externals-jansson2.7-0.x86_64 : iRODS Build Dependency irods-externals-json3.0.1-0.x86_64 : iRODS Build Dependency irods-externals-json3.1.2-0.x86_64 : iRODS Build Dependency irods-externals-json3.7.3-0.x86_64 : iRODS Build Dependency irods-externals-libarchive3.1.2-0.x86_64 : iRODS Build Dependency irods-externals-libarchive3.3.2-0.x86_64 : iRODS Build Dependency irods-externals-libarchive3.3.2-1.x86_64 : iRODS Build Dependency irods-externals-libs359b62371-0.x86_64 : iRODS Build Dependency irods-externals-libs3a30e55e8-0.x86_64 : iRODS Build Dependency irods-externals-libs3a30e55e8-1.x86_64 : iRODS Build Dependency irods-externals-libs3f6a2098e-0.x86_64 : iRODS Build Dependency irods-externals-mungefs1.0.2-0.x86_64 : iRODS Build Dependency irods-externals-mungefs1.0.3-0.x86_64 : iRODS Build Dependency irods-externals-nanodbc2.13.0-0.x86_64 : iRODS Build Dependency irods-externals-qpid-with-proton0.34-0.x86_64 : iRODS Build Dependency irods-externals-qpid-with-proton0.34-1.x86_64 : iRODS Build Dependency irods-externals-redis4.0.10-0.x86_64 : iRODS Build Dependency irods-externals-redis4.0.8-0.x86_64 : iRODS Build Dependency irods-externals-spdlog0.17.0-0.x86_64 : iRODS Build Dependency irods-externals-spdlog1.5.0-0.x86_64 : iRODS Build Dependency irods-externals-spdlog1.5.0-1.x86_64 : iRODS Build Dependency irods-externals-zeromq4-14.1.3-0.x86_64 : iRODS Build Dependency irods-externals-zeromq4-14.1.6-0.x86_64 : iRODS Build Dependency irods-auth-plugin-gsi.x86_64 : The integrated Rule-Oriented Data System irods-auth-plugin-krb.x86_64 : The integrated Rule-Oriented Data System irods-database-plugin-mysql.x86_64 : The integrated Rule-Oriented Data System irods-database-plugin-oracle.x86_64 : The integrated Rule-Oriented Data System irods-database-plugin-postgres.x86_64 : The integrated Rule-Oriented Data System irods-devel.x86_64 : The integrated Rule-Oriented Data System irods-icommands.x86_64 : The integrated Rule-Oriented Data System irods-microservice-plugins-curl.x86_64 : The integrated Rule-Oriented Data System irods-resource-plugin-s3.x86_64 : The integrated Rule-Oriented Data System irods-rule-engine-plugin-apply-access-time.x86_64 : The integrated Rule-Oriented Data System irods-rule-engine-plugin-audit-amqp.x86_64 : The integrated Rule-Oriented Data System irods-rule-engine-plugin-data-movement.x86_64 : The integrated Rule-Oriented Data System irods-rule-engine-plugin-data-replication.x86_64 : The integrated Rule-Oriented Data System irods-rule-engine-plugin-data-verification.x86_64 : The integrated Rule-Oriented Data System irods-rule-engine-plugin-python.x86_64 : The integrated Rule-Oriented Data System irods-rule-engine-plugin-storage-tiering.x86_64 : The integrated Rule-Oriented Data System irods-rule-engine-plugin-tiered-storage.x86_64 : The integrated Rule-Oriented Data System irods-rule-engine-plugin-unified-storage-tiering.x86_64 : The integrated Rule-Oriented Data System irods-rule-engine-plugin-update-collection-mtime.x86_64 : The integrated Rule-Oriented Data System irods-runtime.x86_64 : The integrated Rule-Oriented Data System irods-server.x86_64 : The integrated Rule-Oriented Data System irods_rule_engine_plugin-apply_access_time.x86_64 : The integrated Rule-Oriented Data System irods_rule_engine_plugin-data_movement.x86_64 : The integrated Rule-Oriented Data System irods_rule_engine_plugin-data_replication.x86_64 : The integrated Rule-Oriented Data System irods_rule_engine_plugin-data_verification.x86_64 : The integrated Rule-Oriented Data System irods_rule_engine_plugin-storage_tiering.x86_64 : The integrated Rule-Oriented Data System irods_rule_engine_plugin-unified_storage_tiering.x86_64 : The integrated Rule-Oriented Data System Name and summary matches only, use "search all" for everything. [vitlacil@localhost ~]$
Install additional repositories needed for Python dependencies
[vitlacil@localhost ~]$ sudo yum install epel-release Loaded plugins: fastestmirror, langpacks Loading mirror speeds from cached hostfile * base: mirror.hosthink.net * extras: mirror.hosthink.net * updates: mirror.hosthink.net Resolving Dependencies --> Running transaction check ---> Package epel-release.noarch 0:7-11 will be installed --> Finished Dependency Resolution Dependencies Resolved ==================================================================================================== Package Arch Version Repository Size ==================================================================================================== Installing: epel-release noarch 7-11 extras 15 k Transaction Summary ==================================================================================================== Install 1 Package Total download size: 15 k Installed size: 24 k Is this ok [y/d/N]: y Downloading packages: epel-release-7-11.noarch.rpm | 15 kB 00:00:00 Running transaction check Running transaction test Transaction test succeeded Running transaction Installing : epel-release-7-11.noarch 1/1 Verifying : epel-release-7-11.noarch 1/1 Installed: epel-release.noarch 0:7-11 Complete!
... and Python dependencies
[vitlacil@localhost ~]$ sudo yum install python-psutil python-jsonschema Loaded plugins: fastestmirror, langpacks Loading mirror speeds from cached hostfile epel/x86_64/metalink | 24 kB 00:00:00 * base: mirror.zetup.net * epel: mirror.zetup.net * extras: mirror.zetup.net * updates: mirror.zetup.net epel | 4.7 kB 00:00:00 (1/3): epel/x86_64/group_gz | 95 kB 00:00:00 (2/3): epel/x86_64/updateinfo | 1.0 MB 00:00:00 (3/3): epel/x86_64/primary_db | 6.8 MB 00:00:00 Resolving Dependencies --> Running transaction check ---> Package python2-jsonschema.noarch 0:2.5.1-4.el7 will be installed --> Processing Dependency: python-repoze-lru for package: python2-jsonschema-2.5.1-4.el7.noarch ---> Package python2-psutil.x86_64 0:5.6.7-1.el7 will be installed --> Running transaction check ---> Package python-repoze-lru.noarch 0:0.4-3.el7 will be installed --> Finished Dependency Resolution Dependencies Resolved ==================================================================================================== Package Arch Version Repository Size ==================================================================================================== Installing: python2-jsonschema noarch 2.5.1-4.el7 epel 75 k python2-psutil x86_64 5.6.7-1.el7 epel 399 k Installing for dependencies: python-repoze-lru noarch 0.4-3.el7 epel 13 k Transaction Summary ==================================================================================================== Install 2 Packages (+1 Dependent package) Total download size: 487 k Installed size: 2.6 M Is this ok [y/d/N]: y Downloading packages: warning: /var/cache/yum/x86_64/7/epel/packages/python-repoze-lru-0.4-3.el7.noarch.rpm: Header V3 RSA/SHA256 Signature, key ID 352c64e5: NOKEY Public key for python-repoze-lru-0.4-3.el7.noarch.rpm is not installed (1/3): python-repoze-lru-0.4-3.el7.noarch.rpm | 13 kB 00:00:00 (2/3): python2-jsonschema-2.5.1-4.el7.noarch.rpm | 75 kB 00:00:00 (3/3): python2-psutil-5.6.7-1.el7.x86_64.rpm | 399 kB 00:00:00 ---------------------------------------------------------------------------------------------------- Total 1.3 MB/s | 487 kB 00:00:00 Retrieving key from file:///etc/pki/rpm-gpg/RPM-GPG-KEY-EPEL-7 Importing GPG key 0x352C64E5: Userid : "Fedora EPEL (7) <epel@fedoraproject.org>" Fingerprint: 91e9 7d7c 4a5e 96f1 7f3e 888f 6a2f aea2 352c 64e5 Package : epel-release-7-11.noarch (@extras) From : /etc/pki/rpm-gpg/RPM-GPG-KEY-EPEL-7 Is this ok [y/N]: y Running transaction check Running transaction test Transaction test succeeded Running transaction Installing : python-repoze-lru-0.4-3.el7.noarch 1/3 Installing : python2-jsonschema-2.5.1-4.el7.noarch 2/3 Installing : python2-psutil-5.6.7-1.el7.x86_64 3/3 Verifying : python2-jsonschema-2.5.1-4.el7.noarch 1/3 Verifying : python2-psutil-5.6.7-1.el7.x86_64 2/3 Verifying : python-repoze-lru-0.4-3.el7.noarch 3/3 Installed: python2-jsonschema.noarch 0:2.5.1-4.el7 python2-psutil.x86_64 0:5.6.7-1.el7 Dependency Installed: python-repoze-lru.noarch 0:0.4-3.el7 Complete! [vitlacil@localhost ~]$
Install iRODS iCommands
[vitlacil@localhost ~]$ sudo yum install irods-icommands Loaded plugins: fastestmirror, langpacks Loading mirror speeds from cached hostfile * base: mirrors.glesys.net * epel: mirrors.glesys.net * extras: mirrors.glesys.net * updates: mirrors.glesys.net Resolving Dependencies --> Running transaction check ---> Package irods-icommands.x86_64 0:4.2.7-1 will be installed --> Processing Dependency: irods-runtime = 4.2.7 for package: irods-icommands-4.2.7-1.x86_64 --> Processing Dependency: irods-externals-avro1.7.7-0 for package: irods-icommands-4.2.7-1.x86_64 --> Processing Dependency: irods-externals-jansson2.7-0 for package: irods-icommands-4.2.7-1.x86_64 --> Processing Dependency: irods-externals-clang-runtime3.8-0 for package: irods-icommands-4.2.7-1.x86_64 --> Processing Dependency: irods-externals-zeromq4-14.1.3-0 for package: irods-icommands-4.2.7-1.x86_64 --> Processing Dependency: irods-externals-boost1.60.0-0 for package: irods-icommands-4.2.7-1.x86_64 --> Processing Dependency: irods-externals-libarchive3.3.2-0 for package: irods-icommands-4.2.7-1.x86_64 --> Running transaction check ---> Package irods-externals-avro1.7.7-0.x86_64 0:1.0-1 will be installed ---> Package irods-externals-boost1.60.0-0.x86_64 0:1.0-1 will be installed ---> Package irods-externals-clang-runtime3.8-0.x86_64 0:1.0-1 will be installed ---> Package irods-externals-jansson2.7-0.x86_64 0:1.0-1 will be installed ---> Package irods-externals-libarchive3.3.2-0.x86_64 0:1.0-1 will be installed ---> Package irods-externals-zeromq4-14.1.3-0.x86_64 0:1.0-1 will be installed ---> Package irods-runtime.x86_64 0:4.2.7-1 will be installed --> Finished Dependency Resolution Dependencies Resolved ==================================================================================================== Package Arch Version Repository Size ==================================================================================================== Installing: irods-icommands x86_64 4.2.7-1 renci-irods 526 k Installing for dependencies: irods-externals-avro1.7.7-0 x86_64 1.0-1 renci-irods 1.5 M irods-externals-boost1.60.0-0 x86_64 1.0-1 renci-irods 13 M irods-externals-clang-runtime3.8-0 x86_64 1.0-1 renci-irods 347 k irods-externals-jansson2.7-0 x86_64 1.0-1 renci-irods 165 k irods-externals-libarchive3.3.2-0 x86_64 1.0-1 renci-irods 1.7 M irods-externals-zeromq4-14.1.3-0 x86_64 1.0-1 renci-irods 549 k irods-runtime x86_64 4.2.7-1 renci-irods 3.6 M Transaction Summary ==================================================================================================== Install 1 Package (+7 Dependent packages) Total download size: 21 M Installed size: 158 M Is this ok [y/d/N]: y Downloading packages: (1/8): irods-externals-avro1.7.7-0-1.0-1.x86_64.rpm | 1.5 MB 00:00:03 (2/8): irods-externals-clang-runtime3.8-0-1.0-1.x86_64.rpm | 347 kB 00:00:00 (3/8): irods-externals-jansson2.7-0-1.0-1.x86_64.rpm | 165 kB 00:00:00 (4/8): irods-externals-libarchive3.3.2-0-1.0-1.x86_64.rpm | 1.7 MB 00:00:03 (5/8): irods-externals-zeromq4-14.1.3-0-1.0-1.x86_64.rpm | 549 kB 00:00:01 (6/8): irods-icommands-4.2.7-1.x86_64.rpm | 526 kB 00:00:01 (7/8): irods-externals-boost1.60.0-0-1.0-1.x86_64.rpm | 13 MB 00:00:16 (8/8): irods-runtime-4.2.7-1.x86_64.rpm | 3.6 MB 00:00:08 ---------------------------------------------------------------------------------------------------- Total 1.0 MB/s | 21 MB 00:00:20 Running transaction check Running transaction test Transaction test succeeded Running transaction Installing : irods-externals-avro1.7.7-0-1.0-1.x86_64 1/8 Installing : irods-externals-boost1.60.0-0-1.0-1.x86_64 2/8 Installing : irods-externals-zeromq4-14.1.3-0-1.0-1.x86_64 3/8 Installing : irods-externals-libarchive3.3.2-0-1.0-1.x86_64 4/8 Installing : irods-externals-jansson2.7-0-1.0-1.x86_64 5/8 Installing : irods-externals-clang-runtime3.8-0-1.0-1.x86_64 6/8 Installing : irods-runtime-4.2.7-1.x86_64 7/8 Installing : irods-icommands-4.2.7-1.x86_64 8/8 Verifying : irods-externals-clang-runtime3.8-0-1.0-1.x86_64 1/8 Verifying : irods-externals-jansson2.7-0-1.0-1.x86_64 2/8 Verifying : irods-externals-libarchive3.3.2-0-1.0-1.x86_64 3/8 Verifying : irods-externals-zeromq4-14.1.3-0-1.0-1.x86_64 4/8 Verifying : irods-externals-boost1.60.0-0-1.0-1.x86_64 5/8 Verifying : irods-icommands-4.2.7-1.x86_64 6/8 Verifying : irods-externals-avro1.7.7-0-1.0-1.x86_64 7/8 Verifying : irods-runtime-4.2.7-1.x86_64 8/8 Installed: irods-icommands.x86_64 0:4.2.7-1 Dependency Installed: irods-externals-avro1.7.7-0.x86_64 0:1.0-1 irods-externals-boost1.60.0-0.x86_64 0:1.0-1 irods-externals-clang-runtime3.8-0.x86_64 0:1.0-1 irods-externals-jansson2.7-0.x86_64 0:1.0-1 irods-externals-libarchive3.3.2-0.x86_64 0:1.0-1 irods-externals-zeromq4-14.1.3-0.x86_64 0:1.0-1 irods-runtime.x86_64 0:4.2.7-1 Complete! [vitlacil@localhost ~]$
[vitlacil@localhost ~]$
[vitlacil@localhost ~]$
[vitlacil@localhost ~]$
[vitlacil@localhost ~]$
[vitlacil@localhost ~]$
[vitlacil@localhost ~]$
[vitlacil@localhost ~]$
[vitlacil@localhost ~]$
[vitlacil@localhost ~]$
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[vitlacil@localhost ~]$
[vitlacil@localhost ~]$
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[vitlacil@localhost ~]$
[vitlacil@localhost ~]$
[vitlacil@localhost ~]$
[vitlacil@localhost ~]$
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[vitlacil@localhost ~]$
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[vitlacil@localhost ~]$
[vitlacil@localhost ~]$
[vitlacil@localhost ~]$
[vitlacil@localhost ~]$
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[vitlacil@localhost ~]$
[vitlacil@localhost ~]$
[vitlacil@localhost ~]$
[vitlacil@localhost ~]$
[vitlacil@localhost ~]$
[vitlacil@localhost ~]$ ienv
ERROR: environment_properties::capture: missing environment file. should be at [/home/vitlacil/.irods/irods_environment.json]
irods_version - 4.2.7 [vitlacil@localhost ~]$ iinit
ERROR: environment_properties::capture: missing environment file. should be at [/home/vitlacil/.irods/irods_environment.json]
One or more fields in your iRODS environment file (irods_environment.json) are missing; please enter them. Enter the host name (DNS) of the server to connect to: Enter the port number: Enter your irods user name: Enter your irods zone: Those values will be added to your environment file (for use by other iCommands) if the login succeeds.
Enter your current iRODS password:
ERROR: Save Password failure status = -909000 NO_PASSWORD_ENTERED
[vitlacil@localhost ~]$ [vitlacil@localhost ~]$ [vitlacil@localhost ~]$ [vitlacil@localhost ~]$ [vitlacil@localhost ~]$ [vitlacil@localhost ~]$ ienv
ERROR: environment_properties::capture: missing environment file. should be at [/home/vitlacil/.irods/irods_environment.json]
irods_version - 4.2.7 [vitlacil@localhost ~]$ vi /home/vitlacil/.irods/irods_environment.json [vitlacil@localhost ~]$ [vitlacil@localhost ~]$ [vitlacil@localhost ~]$ iinit
ERROR: iRODS Exception:
file: /irods/lib/core/src/irods_environment_properties.cpp
function: void irods::environment_properties::capture_json(const std::string &)
line: 113
code: -1 (Unknown iRODS error)
message:
[-] /irods/lib/core/src/irods_configuration_parser.cpp:92:irods::error irods::configuration_parser::load_json_object(const std::string &) : status [Unknown iRODS error] errno [Operation not permitted] -- message [failed to load file [/home/vitlacil/.irods/irods_environment.json] json error [unexpected newline]]
stack trace:
Dumping stack trace <0> Offset: 0x65 Address: 0x7f3ec8b55a25 irods::exception::exception(long, std::__1::basic_string<char, std::__1::char_traits<char>, std::__1::allocator<char> > const&, std::__1::basic_string<char, std::__1::char_traits<char>, std::__1::allocator<char> > const&, unsigned int, std::__1::basic_string<char, std::__1::char_traits<char>, std::__1::allocator<char> > const&) <1> Offset: 0xf2 Address: 0x7f3ec8b526f2 irods::environment_properties::capture_json(std::__1::basic_string<char, std::__1::char_traits<char>, std::__1::allocator<char> > const&) <2> Offset: 0xbb Address: 0x7f3ec8b5239b irods::environment_properties::capture() <3> Offset: 0x33 Address: 0x7f3ec8b52253 irods::environment_properties::instance() <4> Offset: Address: 0x7f3ec8b3e690 /lib/libirods_common.so.4.2.7(+0x62690) [0x7f3ec8b3e690] <5> Offset: Address: 0x7f3ec8b3d81a /lib/libirods_common.so.4.2.7(getRodsEnvFromFile+0x5a) [0x7f3ec8b3d81a] <6> Offset: Address: 0x7f3ec8b3d70b /lib/libirods_common.so.4.2.7(_getRodsEnv+0x1b) [0x7f3ec8b3d70b] <7> Offset: Address: 0x7f3ec8b3d6e0 /lib/libirods_common.so.4.2.7(getRodsEnv+0x10) [0x7f3ec8b3d6e0] <8> Offset: Address: 0x40e3db iinit() [0x40e3db] <9> Offset: Address: 0x7f3ec7142555 /lib64/libc.so.6(__libc_start_main+0xf5) [0x7f3ec7142555] <10> Offset: Address: 0x40e1d8 iinit() [0x40e1d8]
One or more fields in your iRODS environment file (irods_environment.json) are
missing; please enter them.
Enter the host name (DNS) of the server to connect to: :q
Enter the port number:
Enter your irods user name:
Enter your irods zone:
Those values will be added to your environment file (for use by
other iCommands) if the login succeeds.
Enter your current iRODS password:
ERROR: Save Password failure status = -909000 NO_PASSWORD_ENTERED
[vitlacil@localhost ~]$ [vitlacil@localhost ~]$ vi /home/vitlacil/.irods/irods_environment.json [vitlacil@localhost ~]$ iinit
ERROR: iRODS Exception:
file: /irods/lib/core/src/irods_environment_properties.cpp
function: void irods::environment_properties::capture_json(const std::string &)
line: 113
code: -1 (Unknown iRODS error)
message:
[-] /irods/lib/core/src/irods_configuration_parser.cpp:92:irods::error irods::configuration_parser::load_json_object(const std::string &) : status [Unknown iRODS error] errno [Operation not permitted] -- message [failed to load file [/home/vitlacil/.irods/irods_environment.json] json error [unexpected newline]]
stack trace:
Dumping stack trace <0> Offset: 0x65 Address: 0x7fc3816dea25 irods::exception::exception(long, std::__1::basic_string<char, std::__1::char_traits<char>, std::__1::allocator<char> > const&, std::__1::basic_string<char, std::__1::char_traits<char>, std::__1::allocator<char> > const&, unsigned int, std::__1::basic_string<char, std::__1::char_traits<char>, std::__1::allocator<char> > const&) <1> Offset: 0xf2 Address: 0x7fc3816db6f2 irods::environment_properties::capture_json(std::__1::basic_string<char, std::__1::char_traits<char>, std::__1::allocator<char> > const&) <2> Offset: 0xbb Address: 0x7fc3816db39b irods::environment_properties::capture() <3> Offset: 0x33 Address: 0x7fc3816db253 irods::environment_properties::instance() <4> Offset: Address: 0x7fc3816c7690 /lib/libirods_common.so.4.2.7(+0x62690) [0x7fc3816c7690] <5> Offset: Address: 0x7fc3816c681a /lib/libirods_common.so.4.2.7(getRodsEnvFromFile+0x5a) [0x7fc3816c681a] <6> Offset: Address: 0x7fc3816c670b /lib/libirods_common.so.4.2.7(_getRodsEnv+0x1b) [0x7fc3816c670b] <7> Offset: Address: 0x7fc3816c66e0 /lib/libirods_common.so.4.2.7(getRodsEnv+0x10) [0x7fc3816c66e0] <8> Offset: Address: 0x40e3db iinit() [0x40e3db] <9> Offset: Address: 0x7fc37fccb555 /lib64/libc.so.6(__libc_start_main+0xf5) [0x7fc37fccb555] <10> Offset: Address: 0x40e1d8 iinit() [0x40e1d8]
One or more fields in your iRODS environment file (irods_environment.json) are
missing; please enter them.
Enter the host name (DNS) of the server to connect to: irods-login.swestore.se
Enter the port number: 2432
Enter your irods user name: s_dejvi
Enter your irods zone: snic.se
Those values will be added to your environment file (for use by
other iCommands) if the login succeeds.
Enter your current iRODS password: [-] /irods/plugins/auth/native/libnative.cpp:342:irods::error native_auth_client_response(irods::plugin_context &, rcComm_t *) : status [CAT_INVALID_AUTHENTICATION] errno [] -- message [Call to rcAuthResponseFailed.]
failed with error -826000 CAT_INVALID_AUTHENTICATION
[vitlacil@localhost ~]$ vi /home/vitlacil/.irods/irods_environment.json [vitlacil@localhost ~]$ vi /home/vitlacil/.irods/irods_environment.json [vitlacil@localhost ~]$ ienv
ERROR: iRODS Exception:
file: /irods/lib/core/src/irods_environment_properties.cpp
function: void irods::environment_properties::capture_json(const std::string &)
line: 113
code: -1 (Unknown iRODS error)
message:
[-] /irods/lib/core/src/irods_configuration_parser.cpp:92:irods::error irods::configuration_parser::load_json_object(const std::string &) : status [Unknown iRODS error] errno [Operation not permitted] -- message [failed to load file [/home/vitlacil/.irods/irods_environment.json] json error [unexpected newline]]
stack trace:
Dumping stack trace <0> Offset: 0x65 Address: 0x7fc5ae704a25 irods::exception::exception(long, std::__1::basic_string<char, std::__1::char_traits<char>, std::__1::allocator<char> > const&, std::__1::basic_string<char, std::__1::char_traits<char>, std::__1::allocator<char> > const&, unsigned int, std::__1::basic_string<char, std::__1::char_traits<char>, std::__1::allocator<char> > const&) <1> Offset: 0xf2 Address: 0x7fc5ae7016f2 irods::environment_properties::capture_json(std::__1::basic_string<char, std::__1::char_traits<char>, std::__1::allocator<char> > const&) <2> Offset: 0xbb Address: 0x7fc5ae70139b irods::environment_properties::capture() <3> Offset: 0x33 Address: 0x7fc5ae701253 irods::environment_properties::instance() <4> Offset: Address: 0x7fc5ae6ed9df /lib/libirods_common.so.4.2.7(printRodsEnv+0x1f) [0x7fc5ae6ed9df] <5> Offset: Address: 0x400b39 ienv() [0x400b39] <6> Offset: Address: 0x7fc5accf1555 /lib64/libc.so.6(__libc_start_main+0xf5) [0x7fc5accf1555] <7> Offset: Address: 0x400969 ienv() [0x400969]
irods_version - 4.2.7
[vitlacil@localhost ~]$ vi /home/vitlacil/.irods/irods_environment.json
[vitlacil@localhost ~]$ ienv
ERROR: iRODS Exception:
file: /irods/lib/core/src/irods_environment_properties.cpp
function: void irods::environment_properties::capture_json(const std::string &)
line: 113
code: -1 (Unknown iRODS error)
message:
[-] /irods/lib/core/src/irods_configuration_parser.cpp:92:irods::error irods::configuration_parser::load_json_object(const std::string &) : status [Unknown iRODS error] errno [Operation not permitted] -- message [failed to load file [/home/vitlacil/.irods/irods_environment.json] json error [unexpected newline]]
stack trace:
Dumping stack trace <0> Offset: 0x65 Address: 0x7fae752d9a25 irods::exception::exception(long, std::__1::basic_string<char, std::__1::char_traits<char>, std::__1::allocator<char> > const&, std::__1::basic_string<char, std::__1::char_traits<char>, std::__1::allocator<char> > const&, unsigned int, std::__1::basic_string<char, std::__1::char_traits<char>, std::__1::allocator<char> > const&) <1> Offset: 0xf2 Address: 0x7fae752d66f2 irods::environment_properties::capture_json(std::__1::basic_string<char, std::__1::char_traits<char>, std::__1::allocator<char> > const&) <2> Offset: 0xbb Address: 0x7fae752d639b irods::environment_properties::capture() <3> Offset: 0x33 Address: 0x7fae752d6253 irods::environment_properties::instance() <4> Offset: Address: 0x7fae752c29df /lib/libirods_common.so.4.2.7(printRodsEnv+0x1f) [0x7fae752c29df] <5> Offset: Address: 0x400b39 ienv() [0x400b39] <6> Offset: Address: 0x7fae738c6555 /lib64/libc.so.6(__libc_start_main+0xf5) [0x7fae738c6555] <7> Offset: Address: 0x400969 ienv() [0x400969]
irods_version - 4.2.7
[vitlacil@localhost ~]$
[vitlacil@localhost ~]$
[vitlacil@localhost ~]$ vi /home/vitlacil/.irods/irods_environment.json
[vitlacil@localhost ~]$ ienv
ERROR: iRODS Exception:
file: /irods/lib/core/src/irods_environment_properties.cpp
function: void irods::environment_properties::capture_json(const std::string &)
line: 113
code: -1 (Unknown iRODS error)
message:
[-] /irods/lib/core/src/irods_configuration_parser.cpp:92:irods::error irods::configuration_parser::load_json_object(const std::string &) : status [Unknown iRODS error] errno [Operation not permitted] -- message [failed to load file [/home/vitlacil/.irods/irods_environment.json] json error [unexpected newline]]
stack trace:
Dumping stack trace <0> Offset: 0x65 Address: 0x7f41b7ac6a25 irods::exception::exception(long, std::__1::basic_string<char, std::__1::char_traits<char>, std::__1::allocator<char> > const&, std::__1::basic_string<char, std::__1::char_traits<char>, std::__1::allocator<char> > const&, unsigned int, std::__1::basic_string<char, std::__1::char_traits<char>, std::__1::allocator<char> > const&) <1> Offset: 0xf2 Address: 0x7f41b7ac36f2 irods::environment_properties::capture_json(std::__1::basic_string<char, std::__1::char_traits<char>, std::__1::allocator<char> > const&) <2> Offset: 0xbb Address: 0x7f41b7ac339b irods::environment_properties::capture() <3> Offset: 0x33 Address: 0x7f41b7ac3253 irods::environment_properties::instance() <4> Offset: Address: 0x7f41b7aaf9df /lib/libirods_common.so.4.2.7(printRodsEnv+0x1f) [0x7f41b7aaf9df] <5> Offset: Address: 0x400b39 ienv() [0x400b39] <6> Offset: Address: 0x7f41b60b3555 /lib64/libc.so.6(__libc_start_main+0xf5) [0x7f41b60b3555] <7> Offset: Address: 0x400969 ienv() [0x400969]
irods_version - 4.2.7
[vitlacil@localhost ~]$
[vitlacil@localhost ~]$
[vitlacil@localhost ~]$
[vitlacil@localhost ~]$
[vitlacil@localhost ~]$
[vitlacil@localhost ~]$
[vitlacil@localhost ~]$ vi /home/vitlacil/.irods/irods_environment.json
[vitlacil@localhost ~]$ ienv
irods_version - 4.2.7
irods_server_control_plane_encryption_num_hash_rounds - 16
irods_host - irods-login.swestore.se
irods_user_name - s_dejvi
irods_zone_name - snic.se
irods_transfer_buffer_size_for_parallel_transfer_in_megabytes - 4
schema_name - irods_environment
irods_server_control_plane_encryption_algorithm - AES-256-CBC
irods_match_hash_policy - compatible
irods_encryption_num_hash_rounds - 16
irods_default_resource - pdc-gpfs
irods_home - /snic.se/home/s_dejvi
schema_version - v3
irods_encryption_salt_size - 8
irods_environment_file - /home/vitlacil/.irods/irods_environment.json
irods_default_number_of_transfer_threads - 4
irods_cwd - /snic.se/home/s_dejvi
irods_session_environment_file - /home/vitlacil/.irods/irods_environment.json.4792
irods_port - 2432
irods_encryption_algorithm - AES-256-CBC
irods_server_control_plane_port - 1248
irods_server_control_plane_key - 32_byte_server_control_plane_key
irods_client_server_negotiation - request_server_negotiation
irods_encryption_key_size - 32
irods_client_server_policy - CS_NEG_REFUSE
irods_default_hash_scheme - SHA256
irods_maximum_size_for_single_buffer_in_megabytes - 32
[vitlacil@localhost ~]$
[vitlacil@localhost ~]$
[vitlacil@localhost ~]$
[vitlacil@localhost ~]$ iinit
Enter your current iRODS password:
[-] /irods/plugins/auth/native/libnative.cpp:342:irods::error native_auth_client_response(irods::plugin_context &, rcComm_t *) : status [CAT_INVALID_AUTHENTICATION] errno [] -- message [Call to rcAuthResponseFailed.]
failed with error -826000 CAT_INVALID_AUTHENTICATION
[vitlacil@localhost ~]$ iinit Enter your current iRODS password: [-] /irods/plugins/auth/native/libnative.cpp:342:irods::error native_auth_client_response(irods::plugin_context &, rcComm_t *) : status [CAT_INVALID_AUTHENTICATION] errno [] -- message [Call to rcAuthResponseFailed.]
failed with error -826000 CAT_INVALID_AUTHENTICATION
[vitlacil@localhost ~]$ [vitlacil@localhost ~]$ [vitlacil@localhost ~]$ [vitlacil@localhost ~]$ [vitlacil@localhost ~]$ [vitlacil@localhost ~]$ iinit Enter your current iRODS password: [-] /irods/plugins/auth/native/libnative.cpp:342:irods::error native_auth_client_response(irods::plugin_context &, rcComm_t *) : status [CAT_INVALID_AUTHENTICATION] errno [] -- message [Call to rcAuthResponseFailed.]
failed with error -826000 CAT_INVALID_AUTHENTICATION
[vitlacil@localhost ~]$ iinit Enter your current iRODS password: [-] /irods/plugins/auth/native/libnative.cpp:342:irods::error native_auth_client_response(irods::plugin_context &, rcComm_t *) : status [CAT_INVALID_AUTHENTICATION] errno [] -- message [Call to rcAuthResponseFailed.]
failed with error -826000 CAT_INVALID_AUTHENTICATION
[vitlacil@localhost ~]$ vi /home/vitlacil/.irods/irods_environment.json [vitlacil@localhost ~]$ iinit Enter your current PAM password: [vitlacil@localhost ~]$ ils /snic.se/home/s_dejvi:
.DS_Store ._.DS_Store SISO.Certificate.pdf project_role_descriptions.docx worst-day-fosdem-2014.pdf C- /snic.se/home/s_dejvi/0 TiddlyWiki C- /snic.se/home/s_dejvi/0 reading C- /snic.se/home/s_dejvi/Dropbox C- /snic.se/home/s_dejvi/EOSC C- /snic.se/home/s_dejvi/EOSC-Hub Reporting C- /snic.se/home/s_dejvi/EUDAT C- /snic.se/home/s_dejvi/FAIR C- /snic.se/home/s_dejvi/FitSM C- /snic.se/home/s_dejvi/Googletakeout C- /snic.se/home/s_dejvi/Magazines C- /snic.se/home/s_dejvi/PIDs C- /snic.se/home/s_dejvi/Private C- /snic.se/home/s_dejvi/Public C- /snic.se/home/s_dejvi/SNIC ALL HANDS 2019 C- /snic.se/home/s_dejvi/SNIC Storage C- /snic.se/home/s_dejvi/Security C- /snic.se/home/s_dejvi/WebDAV test C- /snic.se/home/s_dejvi/iRODS C- /snic.se/home/s_dejvi/nordic data services workshop da aggiungere in AFS C- /snic.se/home/s_dejvi/test.from.klemming
[vitlacil@localhost ~]$
