IRODS iCommands installation on CentOS 7

Here is an example of iRODS iCommands installation on CentOS 7, from iRODS repository

Install the public key and add the repository: :

[vitlacil@localhost ~]$ sudo rpm --import https://packages.irods.org/irods-signing-key.asc
[sudo] password for vitlacil: *************************
[vitlacil@localhost ~]$ wget -qO - https://packages.irods.org/renci-irods.yum.repo | sudo tee /etc/yum.repos.d/renci-irods.yum.repo
   [renci-irods]
    name=RENCI iRODS Repository
    baseurl=https://packages.irods.org/yum/pool/centos$releasever/$basearch
    enabled=1
    gpgcheck=1
    repo_gpgcheck=1
    gpgkey=https://packages.irods.org/irods-signing-key.asc
[vitlacil@localhost ~]$

List available packages [vitlacil@localhost ~]$ sudo yum search irods Loaded plugins: fastestmirror, langpacks Loading mirror speeds from cached hostfile

* base: mirror.hosthink.net
* extras: mirror.hosthink.net
* updates: mirror.hosthink.net

renci-irods/7/x86_64/signature | 819 B 00:00:00 Retrieving key from https://packages.irods.org/irods-signing-key.asc Importing GPG key 0xACF9B42B:

Userid     : "iRODS Consortium <info@irods.org>"
Fingerprint: 9014 ff9f 75c6 6c77 1f1c b574 bd92 5dbd acf9 b42b
From       : https://packages.irods.org/irods-signing-key.asc

Is this ok [y/N]: y renci-irods/7/x86_64/signature | 2.9 kB 00:00:04 !!! renci-irods/7/x86_64/primary_db | 63 kB 00:00:01

1 ================================== N/S matched: irods ==================================
2 ========================================================================================
3 ========================================================================================
4 ========================================================================================
5 ========================================================================================
6 ========================================================================================
7 ========================================================================================
8 ========================================================================================
9 ========================================================================================
10 ========================================================================================

================================== N/S matched: irods ==================================

irods-externals-autoconf5ad3567c-0.x86_64 : iRODS Build Dependency irods-externals-avro1.7.7-0.x86_64 : iRODS Build Dependency irods-externals-avro1.8.2-0.x86_64 : iRODS Build Dependency irods-externals-avro1.9.0-0.x86_64 : iRODS Build Dependency irods-externals-aws-sdk-cpp1.4.89-0.x86_64 : iRODS Build Dependency irods-externals-aws-sdk-cpp1.4.89-1.x86_64 : iRODS Build Dependency irods-externals-boost1.60.0-0.x86_64 : iRODS Build Dependency irods-externals-boost1.67.0-0.x86_64 : iRODS Build Dependency irods-externals-catch22.3.0-0.x86_64 : iRODS Build Dependency irods-externals-clang-runtime3.8-0.x86_64 : iRODS Build Dependency irods-externals-clang-runtime6.0-0.x86_64 : iRODS Build Dependency irods-externals-clang3.8-0.x86_64 : iRODS Build Dependency irods-externals-clang6.0-0.x86_64 : iRODS Build Dependency irods-externals-cmake3.11.4-0.x86_64 : iRODS Build Dependency irods-externals-cmake3.5.2-0.x86_64 : iRODS Build Dependency irods-externals-cppzmq4.1-0.x86_64 : iRODS Build Dependency irods-externals-cppzmq4.2.3-0.x86_64 : iRODS Build Dependency irods-externals-cpr1.3.0-0.x86_64 : iRODS Build Dependency irods-externals-cpr1.3.0-1.x86_64 : iRODS Build Dependency irods-externals-elasticlient0.1.0-0.x86_64 : iRODS Build Dependency irods-externals-elasticlient0.1.0-1.x86_64 : iRODS Build Dependency irods-externals-epm4.2-0.x86_64 : iRODS Build Dependency irods-externals-fmt6.1.2-0.x86_64 : iRODS Build Dependency irods-externals-fmt6.1.2-1.x86_64 : iRODS Build Dependency irods-externals-imagemagick7.0.3-0.x86_64 : iRODS Build Dependency irods-externals-imagemagick7.0.8-0.x86_64 : iRODS Build Dependency irods-externals-jansson2.7-0.x86_64 : iRODS Build Dependency irods-externals-json3.0.1-0.x86_64 : iRODS Build Dependency irods-externals-json3.1.2-0.x86_64 : iRODS Build Dependency irods-externals-json3.7.3-0.x86_64 : iRODS Build Dependency irods-externals-libarchive3.1.2-0.x86_64 : iRODS Build Dependency irods-externals-libarchive3.3.2-0.x86_64 : iRODS Build Dependency irods-externals-libarchive3.3.2-1.x86_64 : iRODS Build Dependency irods-externals-libs359b62371-0.x86_64 : iRODS Build Dependency irods-externals-libs3a30e55e8-0.x86_64 : iRODS Build Dependency irods-externals-libs3a30e55e8-1.x86_64 : iRODS Build Dependency irods-externals-libs3f6a2098e-0.x86_64 : iRODS Build Dependency irods-externals-mungefs1.0.2-0.x86_64 : iRODS Build Dependency irods-externals-mungefs1.0.3-0.x86_64 : iRODS Build Dependency irods-externals-nanodbc2.13.0-0.x86_64 : iRODS Build Dependency irods-externals-qpid-with-proton0.34-0.x86_64 : iRODS Build Dependency irods-externals-qpid-with-proton0.34-1.x86_64 : iRODS Build Dependency irods-externals-redis4.0.10-0.x86_64 : iRODS Build Dependency irods-externals-redis4.0.8-0.x86_64 : iRODS Build Dependency irods-externals-spdlog0.17.0-0.x86_64 : iRODS Build Dependency irods-externals-spdlog1.5.0-0.x86_64 : iRODS Build Dependency irods-externals-spdlog1.5.0-1.x86_64 : iRODS Build Dependency irods-externals-zeromq4-14.1.3-0.x86_64 : iRODS Build Dependency irods-externals-zeromq4-14.1.6-0.x86_64 : iRODS Build Dependency irods-auth-plugin-gsi.x86_64 : The integrated Rule-Oriented Data System irods-auth-plugin-krb.x86_64 : The integrated Rule-Oriented Data System irods-database-plugin-mysql.x86_64 : The integrated Rule-Oriented Data System irods-database-plugin-oracle.x86_64 : The integrated Rule-Oriented Data System irods-database-plugin-postgres.x86_64 : The integrated Rule-Oriented Data System irods-devel.x86_64 : The integrated Rule-Oriented Data System irods-icommands.x86_64 : The integrated Rule-Oriented Data System irods-microservice-plugins-curl.x86_64 : The integrated Rule-Oriented Data System irods-resource-plugin-s3.x86_64 : The integrated Rule-Oriented Data System irods-rule-engine-plugin-apply-access-time.x86_64 : The integrated Rule-Oriented Data System irods-rule-engine-plugin-audit-amqp.x86_64 : The integrated Rule-Oriented Data System irods-rule-engine-plugin-data-movement.x86_64 : The integrated Rule-Oriented Data System irods-rule-engine-plugin-data-replication.x86_64 : The integrated Rule-Oriented Data System irods-rule-engine-plugin-data-verification.x86_64 : The integrated Rule-Oriented Data System irods-rule-engine-plugin-python.x86_64 : The integrated Rule-Oriented Data System irods-rule-engine-plugin-storage-tiering.x86_64 : The integrated Rule-Oriented Data System irods-rule-engine-plugin-tiered-storage.x86_64 : The integrated Rule-Oriented Data System irods-rule-engine-plugin-unified-storage-tiering.x86_64 : The integrated Rule-Oriented Data System irods-rule-engine-plugin-update-collection-mtime.x86_64 : The integrated Rule-Oriented Data System irods-runtime.x86_64 : The integrated Rule-Oriented Data System irods-server.x86_64 : The integrated Rule-Oriented Data System irods_rule_engine_plugin-apply_access_time.x86_64 : The integrated Rule-Oriented Data System irods_rule_engine_plugin-data_movement.x86_64 : The integrated Rule-Oriented Data System irods_rule_engine_plugin-data_replication.x86_64 : The integrated Rule-Oriented Data System irods_rule_engine_plugin-data_verification.x86_64 : The integrated Rule-Oriented Data System irods_rule_engine_plugin-storage_tiering.x86_64 : The integrated Rule-Oriented Data System irods_rule_engine_plugin-unified_storage_tiering.x86_64 : The integrated Rule-Oriented Data System

 Name and summary matches only, use "search all" for everything.

[vitlacil@localhost ~]$ [vitlacil@localhost ~]$ [vitlacil@localhost ~]$ [vitlacil@localhost ~]$ sudo yum install irods-icommands Loaded plugins: fastestmirror, langpacks Loading mirror speeds from cached hostfile

* base: ftp.klid.dk
* extras: ftp.lysator.liu.se
* updates: ftp.lysator.liu.se

Resolving Dependencies --> Running transaction check ---> Package irods-icommands.x86_64 0:4.2.7-1 will be installed --> Processing Dependency: irods-runtime = 4.2.7 for package: irods-icommands-4.2.7-1.x86_64 --> Processing Dependency: irods-externals-avro1.7.7-0 for package: irods-icommands-4.2.7-1.x86_64 --> Processing Dependency: irods-externals-jansson2.7-0 for package: irods-icommands-4.2.7-1.x86_64 --> Processing Dependency: irods-externals-clang-runtime3.8-0 for package: irods-icommands-4.2.7-1.x86_64 --> Processing Dependency: irods-externals-zeromq4-14.1.3-0 for package: irods-icommands-4.2.7-1.x86_64 --> Processing Dependency: irods-externals-boost1.60.0-0 for package: irods-icommands-4.2.7-1.x86_64 --> Processing Dependency: irods-externals-libarchive3.3.2-0 for package: irods-icommands-4.2.7-1.x86_64 --> Running transaction check ---> Package irods-externals-avro1.7.7-0.x86_64 0:1.0-1 will be installed ---> Package irods-externals-boost1.60.0-0.x86_64 0:1.0-1 will be installed ---> Package irods-externals-clang-runtime3.8-0.x86_64 0:1.0-1 will be installed ---> Package irods-externals-jansson2.7-0.x86_64 0:1.0-1 will be installed ---> Package irods-externals-libarchive3.3.2-0.x86_64 0:1.0-1 will be installed ---> Package irods-externals-zeromq4-14.1.3-0.x86_64 0:1.0-1 will be installed ---> Package irods-runtime.x86_64 0:4.2.7-1 will be installed --> Processing Dependency: python-jsonschema for package: irods-runtime-4.2.7-1.x86_64 --> Processing Dependency: python-psutil for package: irods-runtime-4.2.7-1.x86_64 --> Finished Dependency Resolution Error: Package: irods-runtime-4.2.7-1.x86_64 (renci-irods)

          Requires: python-psutil

Error: Package: irods-runtime-4.2.7-1.x86_64 (renci-irods)

          Requires: python-jsonschema
You could try using --skip-broken to work around the problem
You could try running: rpm -Va --nofiles --nodigest

[vitlacil@localhost ~]$ [vitlacil@localhost ~]$ [vitlacil@localhost ~]$ [vitlacil@localhost ~]$ sudo yum python-psutil python-jsonschema Loaded plugins: fastestmirror, langpacks No such command: python-psutil. Please use /bin/yum --help [vitlacil@localhost ~]$ sudo yum install python-psutil python-jsonschema Loaded plugins: fastestmirror, langpacks Loading mirror speeds from cached hostfile

* base: centos.mirror.far.fi
* extras: centos.mirror.far.fi
* updates: centos.mirror.far.fi

No package python-psutil available. No package python-jsonschema available. Error: Nothing to do [vitlacil@localhost ~]$ sudo yum search python-psutil Loaded plugins: fastestmirror, langpacks Loading mirror speeds from cached hostfile

* base: mirror.hosthink.net
* extras: mirror.hosthink.net
* updates: mirror.hosthink.net

Warning: No matches found for: python-psutil No matches found [vitlacil@localhost ~]$ sudo yum install epel-release Loaded plugins: fastestmirror, langpacks Loading mirror speeds from cached hostfile

* base: mirror.hosthink.net
* extras: mirror.hosthink.net
* updates: mirror.hosthink.net

Resolving Dependencies --> Running transaction check ---> Package epel-release.noarch 0:7-11 will be installed --> Finished Dependency Resolution

Dependencies Resolved

========================================================================================

Package                     Arch                  Version              Repository             Size

========================================================================================

Installing:

epel-release                noarch                7-11                 extras                 15 k

Transaction Summary

========================================================================================

Install 1 Package

Total download size: 15 k Installed size: 24 k Is this ok [y/d/N]: y Downloading packages: epel-release-7-11.noarch.rpm | 15 kB 00:00:00 Running transaction check Running transaction test Transaction test succeeded Running transaction

 Installing : epel-release-7-11.noarch                                                         1/1 
 Verifying  : epel-release-7-11.noarch                                                         1/1

Installed:

 epel-release.noarch 0:7-11

Complete! [vitlacil@localhost ~]$ sudo yum install python-psutil python-jsonschema Loaded plugins: fastestmirror, langpacks Loading mirror speeds from cached hostfile epel/x86_64/metalink | 24 kB 00:00:00

* base: mirror.zetup.net
* epel: mirror.zetup.net
* extras: mirror.zetup.net
* updates: mirror.zetup.net

epel | 4.7 kB 00:00:00 (1/3): epel/x86_64/group_gz | 95 kB 00:00:00 (2/3): epel/x86_64/updateinfo | 1.0 MB 00:00:00 (3/3): epel/x86_64/primary_db | 6.8 MB 00:00:00 Resolving Dependencies --> Running transaction check ---> Package python2-jsonschema.noarch 0:2.5.1-4.el7 will be installed --> Processing Dependency: python-repoze-lru for package: python2-jsonschema-2.5.1-4.el7.noarch ---> Package python2-psutil.x86_64 0:5.6.7-1.el7 will be installed --> Running transaction check ---> Package python-repoze-lru.noarch 0:0.4-3.el7 will be installed --> Finished Dependency Resolution

Dependencies Resolved

========================================================================================

Package                        Arch               Version                   Repository        Size

========================================================================================

Installing:

python2-jsonschema             noarch             2.5.1-4.el7               epel              75 k
python2-psutil                 x86_64             5.6.7-1.el7               epel             399 k

Installing for dependencies:

python-repoze-lru              noarch             0.4-3.el7                 epel              13 k

Transaction Summary

========================================================================================

Install 2 Packages (+1 Dependent package)

Total download size: 487 k Installed size: 2.6 M Is this ok [y/d/N]: y Downloading packages: warning: /var/cache/yum/x86_64/7/epel/packages/python-repoze-lru-0.4-3.el7.noarch.rpm: Header V3 RSA/SHA256 Signature, key ID 352c64e5: NOKEY Public key for python-repoze-lru-0.4-3.el7.noarch.rpm is not installed (1/3): python-repoze-lru-0.4-3.el7.noarch.rpm | 13 kB 00:00:00 (2/3): python2-jsonschema-2.5.1-4.el7.noarch.rpm | 75 kB 00:00:00 (3/3): python2-psutil-5.6.7-1.el7.x86_64.rpm | 399 kB 00:00:00

Total 1.3 MB/s | 487 kB 00:00:00 Retrieving key from file:///etc/pki/rpm-gpg/RPM-GPG-KEY-EPEL-7 Importing GPG key 0x352C64E5:

Userid     : "Fedora EPEL (7) <epel@fedoraproject.org>"
Fingerprint: 91e9 7d7c 4a5e 96f1 7f3e 888f 6a2f aea2 352c 64e5
Package    : epel-release-7-11.noarch (@extras)
From       : /etc/pki/rpm-gpg/RPM-GPG-KEY-EPEL-7

Is this ok [y/N]: y Running transaction check Running transaction test Transaction test succeeded Running transaction

 Installing : python-repoze-lru-0.4-3.el7.noarch                                               1/3 
 Installing : python2-jsonschema-2.5.1-4.el7.noarch                                            2/3 
 Installing : python2-psutil-5.6.7-1.el7.x86_64                                                3/3 
 Verifying  : python2-jsonschema-2.5.1-4.el7.noarch                                            1/3 
 Verifying  : python2-psutil-5.6.7-1.el7.x86_64                                                2/3 
 Verifying  : python-repoze-lru-0.4-3.el7.noarch                                               3/3

Installed:

 python2-jsonschema.noarch 0:2.5.1-4.el7            python2-psutil.x86_64 0:5.6.7-1.el7

Dependency Installed:

 python-repoze-lru.noarch 0:0.4-3.el7

Complete! [vitlacil@localhost ~]$ [vitlacil@localhost ~]$ [vitlacil@localhost ~]$ [vitlacil@localhost ~]$ [vitlacil@localhost ~]$ [vitlacil@localhost ~]$ [vitlacil@localhost ~]$ [vitlacil@localhost ~]$ sudo yum install irods-icommands Loaded plugins: fastestmirror, langpacks Loading mirror speeds from cached hostfile

* base: mirrors.glesys.net
* epel: mirrors.glesys.net
* extras: mirrors.glesys.net
* updates: mirrors.glesys.net

Resolving Dependencies --> Running transaction check ---> Package irods-icommands.x86_64 0:4.2.7-1 will be installed --> Processing Dependency: irods-runtime = 4.2.7 for package: irods-icommands-4.2.7-1.x86_64 --> Processing Dependency: irods-externals-avro1.7.7-0 for package: irods-icommands-4.2.7-1.x86_64 --> Processing Dependency: irods-externals-jansson2.7-0 for package: irods-icommands-4.2.7-1.x86_64 --> Processing Dependency: irods-externals-clang-runtime3.8-0 for package: irods-icommands-4.2.7-1.x86_64 --> Processing Dependency: irods-externals-zeromq4-14.1.3-0 for package: irods-icommands-4.2.7-1.x86_64 --> Processing Dependency: irods-externals-boost1.60.0-0 for package: irods-icommands-4.2.7-1.x86_64 --> Processing Dependency: irods-externals-libarchive3.3.2-0 for package: irods-icommands-4.2.7-1.x86_64 --> Running transaction check ---> Package irods-externals-avro1.7.7-0.x86_64 0:1.0-1 will be installed ---> Package irods-externals-boost1.60.0-0.x86_64 0:1.0-1 will be installed ---> Package irods-externals-clang-runtime3.8-0.x86_64 0:1.0-1 will be installed ---> Package irods-externals-jansson2.7-0.x86_64 0:1.0-1 will be installed ---> Package irods-externals-libarchive3.3.2-0.x86_64 0:1.0-1 will be installed ---> Package irods-externals-zeromq4-14.1.3-0.x86_64 0:1.0-1 will be installed ---> Package irods-runtime.x86_64 0:4.2.7-1 will be installed --> Finished Dependency Resolution

Dependencies Resolved

========================================================================================

Package                                   Arch          Version           Repository          Size

========================================================================================

Installing:

irods-icommands                           x86_64        4.2.7-1           renci-irods        526 k

Installing for dependencies:

irods-externals-avro1.7.7-0               x86_64        1.0-1             renci-irods        1.5 M
irods-externals-boost1.60.0-0             x86_64        1.0-1             renci-irods         13 M
irods-externals-clang-runtime3.8-0        x86_64        1.0-1             renci-irods        347 k
irods-externals-jansson2.7-0              x86_64        1.0-1             renci-irods        165 k
irods-externals-libarchive3.3.2-0         x86_64        1.0-1             renci-irods        1.7 M
irods-externals-zeromq4-14.1.3-0          x86_64        1.0-1             renci-irods        549 k
irods-runtime                             x86_64        4.2.7-1           renci-irods        3.6 M

Transaction Summary

========================================================================================

Install 1 Package (+7 Dependent packages)

Total download size: 21 M Installed size: 158 M Is this ok [y/d/N]: y Downloading packages: (1/8): irods-externals-avro1.7.7-0-1.0-1.x86_64.rpm | 1.5 MB 00:00:03 (2/8): irods-externals-clang-runtime3.8-0-1.0-1.x86_64.rpm | 347 kB 00:00:00 (3/8): irods-externals-jansson2.7-0-1.0-1.x86_64.rpm | 165 kB 00:00:00 (4/8): irods-externals-libarchive3.3.2-0-1.0-1.x86_64.rpm | 1.7 MB 00:00:03 (5/8): irods-externals-zeromq4-14.1.3-0-1.0-1.x86_64.rpm | 549 kB 00:00:01 (6/8): irods-icommands-4.2.7-1.x86_64.rpm | 526 kB 00:00:01 (7/8): irods-externals-boost1.60.0-0-1.0-1.x86_64.rpm | 13 MB 00:00:16 (8/8): irods-runtime-4.2.7-1.x86_64.rpm | 3.6 MB 00:00:08

Total 1.0 MB/s | 21 MB 00:00:20 Running transaction check Running transaction test Transaction test succeeded Running transaction

 Installing : irods-externals-avro1.7.7-0-1.0-1.x86_64                                         1/8 
 Installing : irods-externals-boost1.60.0-0-1.0-1.x86_64                                       2/8 
 Installing : irods-externals-zeromq4-14.1.3-0-1.0-1.x86_64                                    3/8 
 Installing : irods-externals-libarchive3.3.2-0-1.0-1.x86_64                                   4/8 
 Installing : irods-externals-jansson2.7-0-1.0-1.x86_64                                        5/8 
 Installing : irods-externals-clang-runtime3.8-0-1.0-1.x86_64                                  6/8 
 Installing : irods-runtime-4.2.7-1.x86_64                                                     7/8 
 Installing : irods-icommands-4.2.7-1.x86_64                                                   8/8 
 Verifying  : irods-externals-clang-runtime3.8-0-1.0-1.x86_64                                  1/8 
 Verifying  : irods-externals-jansson2.7-0-1.0-1.x86_64                                        2/8 
 Verifying  : irods-externals-libarchive3.3.2-0-1.0-1.x86_64                                   3/8 
 Verifying  : irods-externals-zeromq4-14.1.3-0-1.0-1.x86_64                                    4/8 
 Verifying  : irods-externals-boost1.60.0-0-1.0-1.x86_64                                       5/8 
 Verifying  : irods-icommands-4.2.7-1.x86_64                                                   6/8 
 Verifying  : irods-externals-avro1.7.7-0-1.0-1.x86_64                                         7/8 
 Verifying  : irods-runtime-4.2.7-1.x86_64                                                     8/8

Installed:

 irods-icommands.x86_64 0:4.2.7-1

Dependency Installed:

 irods-externals-avro1.7.7-0.x86_64 0:1.0-1        irods-externals-boost1.60.0-0.x86_64 0:1.0-1   
 irods-externals-clang-runtime3.8-0.x86_64 0:1.0-1 irods-externals-jansson2.7-0.x86_64 0:1.0-1    
 irods-externals-libarchive3.3.2-0.x86_64 0:1.0-1  irods-externals-zeromq4-14.1.3-0.x86_64 0:1.0-1
 irods-runtime.x86_64 0:4.2.7-1

Complete! [vitlacil@localhost ~]$ [vitlacil@localhost ~]$ [vitlacil@localhost ~]$ [vitlacil@localhost ~]$ [vitlacil@localhost ~]$ ils

ERROR: environment_properties::capture: missing environment file. should be at [/home/vitlacil/.irods/irods_environment.json]
ERROR: _rcConnect: setRhostInfo error, IRODS_HOST is probably not set correctly status = -302000 USER_RODS_HOST_EMPTY

[vitlacil@localhost ~]$ ls ~/. Desktop Documents Downloads Music Pictures Public Templates Videos [vitlacil@localhost ~]$ ls ~/ Desktop Documents Downloads Music Pictures Public Templates Videos [vitlacil@localhost ~]$ ls ~/. Desktop Documents Downloads Music Pictures Public Templates Videos [vitlacil@localhost ~]$ ls -a ~/. . .bash_logout .cache Desktop .esd_auth .mozilla Public .. .bash_profile .config Documents .ICEauthority Music Templates .bash_history .bashrc .dbus Downloads .local Pictures Videos [vitlacil@localhost ~]$ i Display all 152 possibilities? (y or n) i386 imsettings-info iprsos iadmin imsettings-list iprupdate iapitest imsettings-reload ips ibun imsettings-switch ipsec ibus imv ipset ibus-daemon in iptables ibus-setup indent iptables-restore ibus-table-createdb index_dump iptables-save icd info iptables-xml iceauth infocmp iptc icedax infokey iptunnel ichksum infotocap iput ichmod init ipwd iclienthints insmod iqdel iconv install iqmod iconvconfig install-info iqstat iconvconfig.x86_64 installkernel iquest icp install-printerdriver iquota id instperf ireg ident intel-microcode2ucode irepl idiag-socket-details interdiff irm idn intltool-extract irmdir iecset intltoolize irmtrash ienv intltool-merge irods-grid ierror intltool-prepare irqbalance iexecmd intltool-update irsync iexit ionice irule if iostat iscan ifcfg ip iscsiadm ifconfig ip6tables iscsid ifdown ip6tables-restore iscsi-iname ifenslave ip6tables-save iscsistart ifnames ipa iscsiuio ifsck ipa-certupdate isdv4-serial-inputattach ifstat ipa-client-automount isodebug ifup ipa-client-install isodump igawk ipa-getcert isoinfo iget ipa-getkeytab iso-info igetwild ipa-join iso-read igroupadmin ipa-rmkeytab isosize ihelp ipasswd isovfy iinit ipcalc isysmeta ijsgutenprint.5.2 ipcmk iticket ilocate ipcrm itrim ils ipcs itweb-settings ilsresc iphybun itweb-settings.itweb imcoll iphymv iuserinfo imeta ipmaddr iw imiscsvrinfo iprconfig ixmsg imkdir iprdump izonereport implantisomd5 iprinit [vitlacil@localhost ~]$ i

bash: i: command not found... [vitlacil@localhost ~]$ [vitlacil@localhost ~]$ [vitlacil@localhost ~]$ [vitlacil@localhost ~]$ [vitlacil@localhost ~]$ [vitlacil@localhost ~]$ [vitlacil@localhost ~]$ [vitlacil@localhost ~]$ [vitlacil@localhost ~]$ [vitlacil@localhost ~]$ [vitlacil@localhost ~]$ [vitlacil@localhost ~]$ [vitlacil@localhost ~]$ [vitlacil@localhost ~]$ [vitlacil@localhost ~]$ [vitlacil@localhost ~]$ [vitlacil@localhost ~]$ [vitlacil@localhost ~]$ [vitlacil@localhost ~]$ [vitlacil@localhost ~]$ [vitlacil@localhost ~]$ [vitlacil@localhost ~]$ [vitlacil@localhost ~]$ [vitlacil@localhost ~]$ [vitlacil@localhost ~]$ [vitlacil@localhost ~]$ [vitlacil@localhost ~]$ [vitlacil@localhost ~]$ [vitlacil@localhost ~]$ [vitlacil@localhost ~]$ [vitlacil@localhost ~]$ ienv

ERROR: environment_properties::capture: missing environment file. should be at [/home/vitlacil/.irods/irods_environment.json]

irods_version - 4.2.7 [vitlacil@localhost ~]$ iinit

ERROR: environment_properties::capture: missing environment file. should be at [/home/vitlacil/.irods/irods_environment.json]

One or more fields in your iRODS environment file (irods_environment.json) are missing; please enter them. Enter the host name (DNS) of the server to connect to: Enter the port number: Enter your irods user name: Enter your irods zone: Those values will be added to your environment file (for use by other iCommands) if the login succeeds.

Enter your current iRODS password:

ERROR: Save Password failure status = -909000 NO_PASSWORD_ENTERED

[vitlacil@localhost ~]$ [vitlacil@localhost ~]$ [vitlacil@localhost ~]$ [vitlacil@localhost ~]$ [vitlacil@localhost ~]$ [vitlacil@localhost ~]$ ienv

ERROR: environment_properties::capture: missing environment file. should be at [/home/vitlacil/.irods/irods_environment.json]

irods_version - 4.2.7 [vitlacil@localhost ~]$ vi /home/vitlacil/.irods/irods_environment.json [vitlacil@localhost ~]$ [vitlacil@localhost ~]$ [vitlacil@localhost ~]$ iinit

ERROR: iRODS Exception:
   file: /irods/lib/core/src/irods_environment_properties.cpp
   function: void irods::environment_properties::capture_json(const std::string &)
   line: 113
   code: -1 (Unknown iRODS error)
   message:
       [-]	/irods/lib/core/src/irods_configuration_parser.cpp:92:irods::error irods::configuration_parser::load_json_object(const std::string &) :  status [Unknown iRODS error]  errno [Operation not permitted] -- message [failed to load file [/home/vitlacil/.irods/irods_environment.json] json error [unexpected newline]]

stack trace:

Dumping stack trace <0> Offset: 0x65 Address: 0x7f3ec8b55a25 irods::exception::exception(long, std::__1::basic_string<char, std::__1::char_traits<char>, std::__1::allocator<char> > const&, std::__1::basic_string<char, std::__1::char_traits<char>, std::__1::allocator<char> > const&, unsigned int, std::__1::basic_string<char, std::__1::char_traits<char>, std::__1::allocator<char> > const&) <1> Offset: 0xf2 Address: 0x7f3ec8b526f2 irods::environment_properties::capture_json(std::__1::basic_string<char, std::__1::char_traits<char>, std::__1::allocator<char> > const&) <2> Offset: 0xbb Address: 0x7f3ec8b5239b irods::environment_properties::capture() <3> Offset: 0x33 Address: 0x7f3ec8b52253 irods::environment_properties::instance() <4> Offset: Address: 0x7f3ec8b3e690 /lib/libirods_common.so.4.2.7(+0x62690) [0x7f3ec8b3e690] <5> Offset: Address: 0x7f3ec8b3d81a /lib/libirods_common.so.4.2.7(getRodsEnvFromFile+0x5a) [0x7f3ec8b3d81a] <6> Offset: Address: 0x7f3ec8b3d70b /lib/libirods_common.so.4.2.7(_getRodsEnv+0x1b) [0x7f3ec8b3d70b] <7> Offset: Address: 0x7f3ec8b3d6e0 /lib/libirods_common.so.4.2.7(getRodsEnv+0x10) [0x7f3ec8b3d6e0] <8> Offset: Address: 0x40e3db iinit() [0x40e3db] <9> Offset: Address: 0x7f3ec7142555 /lib64/libc.so.6(__libc_start_main+0xf5) [0x7f3ec7142555] <10> Offset: Address: 0x40e1d8 iinit() [0x40e1d8]

One or more fields in your iRODS environment file (irods_environment.json) are missing; please enter them. Enter the host name (DNS) of the server to connect to: :q Enter the port number: Enter your irods user name: Enter your irods zone: Those values will be added to your environment file (for use by other iCommands) if the login succeeds.

Enter your current iRODS password:

ERROR: Save Password failure status = -909000 NO_PASSWORD_ENTERED

[vitlacil@localhost ~]$ [vitlacil@localhost ~]$ vi /home/vitlacil/.irods/irods_environment.json [vitlacil@localhost ~]$ iinit

ERROR: iRODS Exception:
   file: /irods/lib/core/src/irods_environment_properties.cpp
   function: void irods::environment_properties::capture_json(const std::string &)
   line: 113
   code: -1 (Unknown iRODS error)
   message:
       [-]	/irods/lib/core/src/irods_configuration_parser.cpp:92:irods::error irods::configuration_parser::load_json_object(const std::string &) :  status [Unknown iRODS error]  errno [Operation not permitted] -- message [failed to load file [/home/vitlacil/.irods/irods_environment.json] json error [unexpected newline]]

stack trace:

Dumping stack trace <0> Offset: 0x65 Address: 0x7fc3816dea25 irods::exception::exception(long, std::__1::basic_string<char, std::__1::char_traits<char>, std::__1::allocator<char> > const&, std::__1::basic_string<char, std::__1::char_traits<char>, std::__1::allocator<char> > const&, unsigned int, std::__1::basic_string<char, std::__1::char_traits<char>, std::__1::allocator<char> > const&) <1> Offset: 0xf2 Address: 0x7fc3816db6f2 irods::environment_properties::capture_json(std::__1::basic_string<char, std::__1::char_traits<char>, std::__1::allocator<char> > const&) <2> Offset: 0xbb Address: 0x7fc3816db39b irods::environment_properties::capture() <3> Offset: 0x33 Address: 0x7fc3816db253 irods::environment_properties::instance() <4> Offset: Address: 0x7fc3816c7690 /lib/libirods_common.so.4.2.7(+0x62690) [0x7fc3816c7690] <5> Offset: Address: 0x7fc3816c681a /lib/libirods_common.so.4.2.7(getRodsEnvFromFile+0x5a) [0x7fc3816c681a] <6> Offset: Address: 0x7fc3816c670b /lib/libirods_common.so.4.2.7(_getRodsEnv+0x1b) [0x7fc3816c670b] <7> Offset: Address: 0x7fc3816c66e0 /lib/libirods_common.so.4.2.7(getRodsEnv+0x10) [0x7fc3816c66e0] <8> Offset: Address: 0x40e3db iinit() [0x40e3db] <9> Offset: Address: 0x7fc37fccb555 /lib64/libc.so.6(__libc_start_main+0xf5) [0x7fc37fccb555] <10> Offset: Address: 0x40e1d8 iinit() [0x40e1d8]

One or more fields in your iRODS environment file (irods_environment.json) are missing; please enter them. Enter the host name (DNS) of the server to connect to: irods-login.swestore.se Enter the port number: 2432 Enter your irods user name: s_dejvi Enter your irods zone: snic.se Those values will be added to your environment file (for use by other iCommands) if the login succeeds.

Enter your current iRODS password: [-] /irods/plugins/auth/native/libnative.cpp:342:irods::error native_auth_client_response(irods::plugin_context &, rcComm_t *) : status [CAT_INVALID_AUTHENTICATION] errno [] -- message [Call to rcAuthResponseFailed.]

failed with error -826000 CAT_INVALID_AUTHENTICATION

[vitlacil@localhost ~]$ vi /home/vitlacil/.irods/irods_environment.json [vitlacil@localhost ~]$ vi /home/vitlacil/.irods/irods_environment.json [vitlacil@localhost ~]$ ienv

ERROR: iRODS Exception:
   file: /irods/lib/core/src/irods_environment_properties.cpp
   function: void irods::environment_properties::capture_json(const std::string &)
   line: 113
   code: -1 (Unknown iRODS error)
   message:
       [-]	/irods/lib/core/src/irods_configuration_parser.cpp:92:irods::error irods::configuration_parser::load_json_object(const std::string &) :  status [Unknown iRODS error]  errno [Operation not permitted] -- message [failed to load file [/home/vitlacil/.irods/irods_environment.json] json error [unexpected newline]]

stack trace:

Dumping stack trace <0> Offset: 0x65 Address: 0x7fc5ae704a25 irods::exception::exception(long, std::__1::basic_string<char, std::__1::char_traits<char>, std::__1::allocator<char> > const&, std::__1::basic_string<char, std::__1::char_traits<char>, std::__1::allocator<char> > const&, unsigned int, std::__1::basic_string<char, std::__1::char_traits<char>, std::__1::allocator<char> > const&) <1> Offset: 0xf2 Address: 0x7fc5ae7016f2 irods::environment_properties::capture_json(std::__1::basic_string<char, std::__1::char_traits<char>, std::__1::allocator<char> > const&) <2> Offset: 0xbb Address: 0x7fc5ae70139b irods::environment_properties::capture() <3> Offset: 0x33 Address: 0x7fc5ae701253 irods::environment_properties::instance() <4> Offset: Address: 0x7fc5ae6ed9df /lib/libirods_common.so.4.2.7(printRodsEnv+0x1f) [0x7fc5ae6ed9df] <5> Offset: Address: 0x400b39 ienv() [0x400b39] <6> Offset: Address: 0x7fc5accf1555 /lib64/libc.so.6(__libc_start_main+0xf5) [0x7fc5accf1555] <7> Offset: Address: 0x400969 ienv() [0x400969]

irods_version - 4.2.7 [vitlacil@localhost ~]$ vi /home/vitlacil/.irods/irods_environment.json [vitlacil@localhost ~]$ ienv

ERROR: iRODS Exception:
   file: /irods/lib/core/src/irods_environment_properties.cpp
   function: void irods::environment_properties::capture_json(const std::string &)
   line: 113
   code: -1 (Unknown iRODS error)
   message:
       [-]	/irods/lib/core/src/irods_configuration_parser.cpp:92:irods::error irods::configuration_parser::load_json_object(const std::string &) :  status [Unknown iRODS error]  errno [Operation not permitted] -- message [failed to load file [/home/vitlacil/.irods/irods_environment.json] json error [unexpected newline]]

stack trace:

Dumping stack trace <0> Offset: 0x65 Address: 0x7fae752d9a25 irods::exception::exception(long, std::__1::basic_string<char, std::__1::char_traits<char>, std::__1::allocator<char> > const&, std::__1::basic_string<char, std::__1::char_traits<char>, std::__1::allocator<char> > const&, unsigned int, std::__1::basic_string<char, std::__1::char_traits<char>, std::__1::allocator<char> > const&) <1> Offset: 0xf2 Address: 0x7fae752d66f2 irods::environment_properties::capture_json(std::__1::basic_string<char, std::__1::char_traits<char>, std::__1::allocator<char> > const&) <2> Offset: 0xbb Address: 0x7fae752d639b irods::environment_properties::capture() <3> Offset: 0x33 Address: 0x7fae752d6253 irods::environment_properties::instance() <4> Offset: Address: 0x7fae752c29df /lib/libirods_common.so.4.2.7(printRodsEnv+0x1f) [0x7fae752c29df] <5> Offset: Address: 0x400b39 ienv() [0x400b39] <6> Offset: Address: 0x7fae738c6555 /lib64/libc.so.6(__libc_start_main+0xf5) [0x7fae738c6555] <7> Offset: Address: 0x400969 ienv() [0x400969]

irods_version - 4.2.7 [vitlacil@localhost ~]$ [vitlacil@localhost ~]$ [vitlacil@localhost ~]$ vi /home/vitlacil/.irods/irods_environment.json [vitlacil@localhost ~]$ ienv

ERROR: iRODS Exception:
   file: /irods/lib/core/src/irods_environment_properties.cpp
   function: void irods::environment_properties::capture_json(const std::string &)
   line: 113
   code: -1 (Unknown iRODS error)
   message:
       [-]	/irods/lib/core/src/irods_configuration_parser.cpp:92:irods::error irods::configuration_parser::load_json_object(const std::string &) :  status [Unknown iRODS error]  errno [Operation not permitted] -- message [failed to load file [/home/vitlacil/.irods/irods_environment.json] json error [unexpected newline]]

stack trace:

Dumping stack trace <0> Offset: 0x65 Address: 0x7f41b7ac6a25 irods::exception::exception(long, std::__1::basic_string<char, std::__1::char_traits<char>, std::__1::allocator<char> > const&, std::__1::basic_string<char, std::__1::char_traits<char>, std::__1::allocator<char> > const&, unsigned int, std::__1::basic_string<char, std::__1::char_traits<char>, std::__1::allocator<char> > const&) <1> Offset: 0xf2 Address: 0x7f41b7ac36f2 irods::environment_properties::capture_json(std::__1::basic_string<char, std::__1::char_traits<char>, std::__1::allocator<char> > const&) <2> Offset: 0xbb Address: 0x7f41b7ac339b irods::environment_properties::capture() <3> Offset: 0x33 Address: 0x7f41b7ac3253 irods::environment_properties::instance() <4> Offset: Address: 0x7f41b7aaf9df /lib/libirods_common.so.4.2.7(printRodsEnv+0x1f) [0x7f41b7aaf9df] <5> Offset: Address: 0x400b39 ienv() [0x400b39] <6> Offset: Address: 0x7f41b60b3555 /lib64/libc.so.6(__libc_start_main+0xf5) [0x7f41b60b3555] <7> Offset: Address: 0x400969 ienv() [0x400969]

irods_version - 4.2.7 [vitlacil@localhost ~]$ [vitlacil@localhost ~]$ [vitlacil@localhost ~]$ [vitlacil@localhost ~]$ [vitlacil@localhost ~]$ [vitlacil@localhost ~]$ [vitlacil@localhost ~]$ vi /home/vitlacil/.irods/irods_environment.json [vitlacil@localhost ~]$ ienv irods_version - 4.2.7 irods_server_control_plane_encryption_num_hash_rounds - 16 irods_host - irods-login.swestore.se irods_user_name - s_dejvi irods_zone_name - snic.se irods_transfer_buffer_size_for_parallel_transfer_in_megabytes - 4 schema_name - irods_environment irods_server_control_plane_encryption_algorithm - AES-256-CBC irods_match_hash_policy - compatible irods_encryption_num_hash_rounds - 16 irods_default_resource - pdc-gpfs irods_home - /snic.se/home/s_dejvi schema_version - v3 irods_encryption_salt_size - 8 irods_environment_file - /home/vitlacil/.irods/irods_environment.json irods_default_number_of_transfer_threads - 4 irods_cwd - /snic.se/home/s_dejvi irods_session_environment_file - /home/vitlacil/.irods/irods_environment.json.4792 irods_port - 2432 irods_encryption_algorithm - AES-256-CBC irods_server_control_plane_port - 1248 irods_server_control_plane_key - 32_byte_server_control_plane_key irods_client_server_negotiation - request_server_negotiation irods_encryption_key_size - 32 irods_client_server_policy - CS_NEG_REFUSE irods_default_hash_scheme - SHA256 irods_maximum_size_for_single_buffer_in_megabytes - 32 [vitlacil@localhost ~]$ [vitlacil@localhost ~]$ [vitlacil@localhost ~]$ [vitlacil@localhost ~]$ iinit Enter your current iRODS password: [-] /irods/plugins/auth/native/libnative.cpp:342:irods::error native_auth_client_response(irods::plugin_context &, rcComm_t *) : status [CAT_INVALID_AUTHENTICATION] errno [] -- message [Call to rcAuthResponseFailed.]

failed with error -826000 CAT_INVALID_AUTHENTICATION

[vitlacil@localhost ~]$ iinit Enter your current iRODS password: [-] /irods/plugins/auth/native/libnative.cpp:342:irods::error native_auth_client_response(irods::plugin_context &, rcComm_t *) : status [CAT_INVALID_AUTHENTICATION] errno [] -- message [Call to rcAuthResponseFailed.]

failed with error -826000 CAT_INVALID_AUTHENTICATION

[vitlacil@localhost ~]$ [vitlacil@localhost ~]$ [vitlacil@localhost ~]$ [vitlacil@localhost ~]$ [vitlacil@localhost ~]$ [vitlacil@localhost ~]$ iinit Enter your current iRODS password: [-] /irods/plugins/auth/native/libnative.cpp:342:irods::error native_auth_client_response(irods::plugin_context &, rcComm_t *) : status [CAT_INVALID_AUTHENTICATION] errno [] -- message [Call to rcAuthResponseFailed.]

failed with error -826000 CAT_INVALID_AUTHENTICATION

[vitlacil@localhost ~]$ iinit Enter your current iRODS password: [-] /irods/plugins/auth/native/libnative.cpp:342:irods::error native_auth_client_response(irods::plugin_context &, rcComm_t *) : status [CAT_INVALID_AUTHENTICATION] errno [] -- message [Call to rcAuthResponseFailed.]

failed with error -826000 CAT_INVALID_AUTHENTICATION

[vitlacil@localhost ~]$ vi /home/vitlacil/.irods/irods_environment.json [vitlacil@localhost ~]$ iinit Enter your current PAM password: [vitlacil@localhost ~]$ ils /snic.se/home/s_dejvi:

 .DS_Store
 ._.DS_Store
 SISO.Certificate.pdf
 project_role_descriptions.docx
 worst-day-fosdem-2014.pdf
 C- /snic.se/home/s_dejvi/0 TiddlyWiki
 C- /snic.se/home/s_dejvi/0 reading
 C- /snic.se/home/s_dejvi/Dropbox
 C- /snic.se/home/s_dejvi/EOSC
 C- /snic.se/home/s_dejvi/EOSC-Hub Reporting
 C- /snic.se/home/s_dejvi/EUDAT
 C- /snic.se/home/s_dejvi/FAIR
 C- /snic.se/home/s_dejvi/FitSM
 C- /snic.se/home/s_dejvi/Googletakeout
 C- /snic.se/home/s_dejvi/Magazines
 C- /snic.se/home/s_dejvi/PIDs
 C- /snic.se/home/s_dejvi/Private
 C- /snic.se/home/s_dejvi/Public
 C- /snic.se/home/s_dejvi/SNIC ALL HANDS 2019
 C- /snic.se/home/s_dejvi/SNIC Storage
 C- /snic.se/home/s_dejvi/Security
 C- /snic.se/home/s_dejvi/WebDAV test
 C- /snic.se/home/s_dejvi/iRODS
 C- /snic.se/home/s_dejvi/nordic data services workshop da aggiungere in AFS
 C- /snic.se/home/s_dejvi/test.from.klemming

[vitlacil@localhost ~]$

IRODS iCommands installation on CentOS 7

Contents

================================== N/S matched: irods ==================================

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