IRODS iCommands installation on Ubuntu 16.04

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Install the public key and add the repository

vitlacil@host:~$ wget -qO - https://packages.irods.org/irods-signing-key.asc | sudo apt-key add -
[sudo] password for vitlacil: *************************
OK
vitlacil@host:~$ wget -qO - https://packages.irods.org/irods-signing-key.asc | sudo apt-key add -
OK
vitlacil@host:~$ echo "deb [arch=amd64] https://packages.irods.org/apt/ $(lsb_release -sc) main" | sudo tee /etc/apt/sources.list.d/renci-irods.list
deb [arch=amd64] https://packages.irods.org/apt/ xenial main
vitlacil@host:~$ sudo apt-get update
Hit:1 http://se.archive.ubuntu.com/ubuntu xenial InRelease
Hit:2 http://se.archive.ubuntu.com/ubuntu xenial-updates InRelease             
Hit:3 http://se.archive.ubuntu.com/ubuntu xenial-backports InRelease           
Get:4 http://security.ubuntu.com/ubuntu xenial-security InRelease [109 kB]     
Get:5 https://packages.irods.org/apt xenial InRelease [3 499 B]                
Get:6 http://security.ubuntu.com/ubuntu xenial-security/main amd64 DEP-11 Metadata [76,7 kB]
Get:7 https://packages.irods.org/apt xenial/main amd64 Packages [31,8 kB]
Get:8 http://security.ubuntu.com/ubuntu xenial-security/universe amd64 DEP-11 Metadata [124 kB]
Get:9 http://security.ubuntu.com/ubuntu xenial-security/multiverse amd64 DEP-11 Metadata [2 464 B]
Fetched 348 kB in 1s (306 kB/s)                                            
Reading package lists... Done

List available packages

vitlacil@host:~$ apt-cache search irods
php-irods-prods - PHP client API for iRODS
irods-auth-plugin-gsi - The integrated Rule-Oriented Data System
irods-auth-plugin-krb - The integrated Rule-Oriented Data System
irods-database-plugin-mysql - The integrated Rule-Oriented Data System
irods-database-plugin-oracle - The integrated Rule-Oriented Data System
irods-database-plugin-postgres - The integrated Rule-Oriented Data System
irods-dev - The integrated Rule-Oriented Data System
irods-externals-autoconf5ad3567c-0 - iRODS Build Dependency
irods-externals-avro1.7.7-0 - iRODS Build Dependency
irods-externals-avro1.8.2-0 - iRODS Build Dependency
irods-externals-avro1.9.0-0 - iRODS Build Dependency
irods-externals-aws-sdk-cpp1.4.89-0 - iRODS Build Dependency
irods-externals-aws-sdk-cpp1.4.89-1 - iRODS Build Dependency
irods-externals-boost1.60.0-0 - iRODS Build Dependency
irods-externals-boost1.67.0-0 - iRODS Build Dependency
irods-externals-catch22.3.0-0 - iRODS Build Dependency
irods-externals-clang3.8-0 - iRODS Build Dependency
irods-externals-clang6.0-0 - iRODS Build Dependency
irods-externals-clang-runtime3.8-0 - iRODS Build Dependency
irods-externals-clang-runtime6.0-0 - iRODS Build Dependency
irods-externals-cmake3.5.2-0 - iRODS Build Dependency
irods-externals-cmake3.11.4-0 - iRODS Build Dependency
irods-externals-cppzmq4.1-0 - iRODS Build Dependency
irods-externals-cppzmq4.2.3-0 - iRODS Build Dependency
irods-externals-cpr1.3.0-0 - iRODS Build Dependency
irods-externals-cpr1.3.0-1 - iRODS Build Dependency
irods-externals-elasticlient0.1.0-0 - iRODS Build Dependency
irods-externals-elasticlient0.1.0-1 - iRODS Build Dependency
irods-externals-epm4.2-0 - iRODS Build Dependency
irods-externals-fmt6.1.2-0 - iRODS Build Dependency
irods-externals-fmt6.1.2-1 - iRODS Build Dependency
irods-externals-imagemagick7.0.3-0 - iRODS Build Dependency
irods-externals-imagemagick7.0.8-0 - iRODS Build Dependency
irods-externals-jansson2.7-0 - iRODS Build Dependency
irods-externals-json3.0.1-0 - iRODS Build Dependency
irods-externals-json3.1.2-0 - iRODS Build Dependency
irods-externals-json3.7.3-0 - iRODS Build Dependency
irods-externals-libarchive3.1.2-0 - iRODS Build Dependency 
irods-externals-libarchive3.3.2-0 - iRODS Build Dependency
irods-externals-libarchive3.3.2-1 - iRODS Build Dependency
irods-externals-libs3a30e55e8-0 - iRODS Build Dependency
irods-externals-libs3a30e55e8-1 - iRODS Build Dependency
irods-externals-libs359b62371-0 - iRODS Build Dependency
irods-externals-mungefs1.0.2-0 - iRODS Build Dependency
irods-externals-mungefs1.0.3-0 - iRODS Build Dependency
irods-externals-nanodbc2.13.0-0 - iRODS Build Dependency
irods-externals-qpid-with-proton0.34-0 - iRODS Build Dependency
irods-externals-qpid-with-proton0.34-1 - iRODS Build Dependency
irods-externals-redis4.0.8-0 - iRODS Build Dependency
irods-externals-redis4.0.10-0 - iRODS Build Dependency
irods-externals-spdlog0.17.0-0 - iRODS Build Dependency
irods-externals-spdlog1.5.0-0 - iRODS Build Dependency
irods-externals-spdlog1.5.0-1 - iRODS Build Dependency
irods-externals-zeromq4-14.1.3-0 - iRODS Build Dependency
irods-externals-zeromq4-14.1.6-0 - iRODS Build Dependency 
irods-icommands - The integrated Rule-Oriented Data System
irods-microservice-plugins-curl - The integrated Rule-Oriented Data System
irods-resource-plugin-s3 - The integrated Rule-Oriented Data System
irods-rule-engine-plugin-apply-access-time - The integrated Rule-Oriented Data System
irods-rule-engine-plugin-audit-amqp - The integrated Rule-Oriented Data System
irods-rule-engine-plugin-data-movement - The integrated Rule-Oriented Data System
irods-rule-engine-plugin-data-replication - The integrated Rule-Oriented Data System
irods-rule-engine-plugin-data-verification - The integrated Rule-Oriented Data System
irods-rule-engine-plugin-python - The integrated Rule-Oriented Data System
irods-rule-engine-plugin-storage-tiering - The integrated Rule-Oriented Data System
irods-rule-engine-plugin-tiered-storage - The integrated Rule-Oriented Data System
irods-rule-engine-plugin-unified-storage-tiering - The integrated Rule-Oriented Data System
irods-rule-engine-plugin-update-collection-mtime - The integrated Rule-Oriented Data System
irods-runtime - The integrated Rule-Oriented Data System
irods-server - The integrated Rule-Oriented Data System
vitlacil@host:~$ 

Install iRODS iCommands

vitlacil@host:~$ sudo apt install irods-icommands 
Reading package lists... Done 
Building dependency tree       
Reading state information... Done
The following additional packages will be installed:
 irods-externals-avro1.7.7-0 irods-externals-boost1.60.0-0
 irods-externals-clang-runtime3.8-0 irods-externals-jansson2.7-0
 irods-externals-libarchive3.3.2-0 irods-externals-zeromq4-14.1.3-0
 irods-runtime python-cffi-backend python-chardet python-cryptography
 python-enum34 python-idna python-ipaddress python-ndg-httpsclient
 python-openssl python-pkg-resources python-psutil python-pyasn1
 python-requests python-six python-urllib3
Suggested packages:
 python-cryptography-doc python-cryptography-vectors python-enum34-doc
 python-openssl-doc python-openssl-dbg python-setuptools python-psutil-doc
 python-ntlm
The following NEW packages will be installed:
 irods-externals-avro1.7.7-0 irods-externals-boost1.60.0-0
 irods-externals-clang-runtime3.8-0 irods-externals-jansson2.7-0
 irods-externals-libarchive3.3.2-0 irods-externals-zeromq4-14.1.3-0
 irods-icommands irods-runtime python-cffi-backend python-chardet
 python-cryptography python-enum34 python-idna python-ipaddress
 python-ndg-httpsclient python-openssl python-pkg-resources python-psutil
 python-pyasn1 python-requests python-six python-urllib3
0 upgraded, 22 newly installed, 0 to remove and 0 not upgraded.
Need to get 25,9 MB of archives. 
After this operation, 199 MB of additional disk space will be used. 
Do you want to continue? [Y/n] y
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Get:14 http://se.archive.ubuntu.com/ubuntu xenial-updates/main amd64 python-requests all 2.9.1-3ubuntu0.1 [55,9 kB]
Get:15 https://packages.irods.org/apt xenial/main amd64 irods-externals-avro1.7.7-0 amd64 1.0~xenial [1 566 kB]
Get:16 https://packages.irods.org/apt xenial/main amd64 irods-externals-boost1.60.0-0 amd64 1.0~xenial [13,8 MB]
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Get:21 https://packages.irods.org/apt xenial/main amd64 irods-runtime amd64 4.2.7 [5 854 kB]
Get:22 https://packages.irods.org/apt xenial/main amd64 irods-icommands amd64 4.2.7 [989 kB]
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Setting up python-pkg-resources (20.7.0-1) ...
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Setting up irods-runtime (4.2.7) ...
Setting up irods-icommands (4.2.7) ...
vitlacil@host:~$ 

Configure the iRODS environment

NOTE: Create your own configuration file !!

vitlacil@host:~$ cd /home/vitlacil/
vitlacil@host:~$ mkdir .irods
vitlacil@host:~$ cat /home/vitlacil/.irods/irods_environment.json
{
 "irods_host": "irods-login.swestore.se", 
 "irods_port": 2432,
 "irods_default_resource": "pdc-gpfs",
 "irods_home": "/snic.se/home/s_dejvi",
 "irods_cwd": "/snic.se/home/s_dejvi",
 "irods_user_name": "s_dejvi",
 "irods_zone_name": "snic.se", 
 "irods_client_server_negotiation": "request_server_negotiation",
 "irods_client_server_policy": "CS_NEG_REFUSE",
 "irods_default_hash_scheme": "SHA256",
 "irods_encryption_algorithm": "AES-256-CBC",
 "irods_encryption_key_size": 32,
 "irods_encryption_num_hash_rounds": 16,
 "irods_encryption_salt_size": 8,
 "irods_match_hash_policy": "compatible",
 "irods_authentication_scheme" : "PAM"
}

Authenticate and test iRODS iCommands client

vitlacil@host:~$ iinit
Enter your current PAM password:
vitlacil@host:~$ ils
/snic.se/home/s_dejvi:
 .DS_Store
 ._.DS_Store
 SISO.Certificate.pdf
 project_role_descriptions.docx
 worst-day-fosdem-2014.pdf
 C- /snic.se/home/s_dejvi/0 TiddlyWiki
 C- /snic.se/home/s_dejvi/0 reading
 C- /snic.se/home/s_dejvi/EOSC
 C- /snic.se/home/s_dejvi/EUDAT
 C- /snic.se/home/s_dejvi/FAIR
 C- /snic.se/home/s_dejvi/FitSM
 .....
vitlacil@host:~$

Back to Swestore-iRODS Documentation