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Rosetta - Revision history
2024-03-29T15:45:35Z
Revision history for this page on the wiki
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https://snicdocs.nsc.liu.se/w/index.php?title=Rosetta&diff=6191&oldid=prev
Åke Sandgren (HPC2N): /* License */
2015-12-02T17:15:09Z
<p><span dir="auto"><span class="autocomment">License</span></span></p>
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<td colspan="2" style="background-color: #fff; color: #222; text-align: center;">← Older revision</td>
<td colspan="2" style="background-color: #fff; color: #222; text-align: center;">Revision as of 17:15, 2 December 2015</td>
</tr><tr><td colspan="2" class="diff-lineno" id="mw-diff-left-l20" >Line 20:</td>
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<tr><td class='diff-marker'> </td><td style="background-color: #f8f9fa; color: #222; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><div>[[NSC]] has a site license for academic users.</div></td><td class='diff-marker'> </td><td style="background-color: #f8f9fa; color: #222; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><div>[[NSC]] has a site license for academic users.</div></td></tr>
<tr><td colspan="2"> </td><td class='diff-marker'>+</td><td style="color: #222; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #a3d3ff; vertical-align: top; white-space: pre-wrap;"><div><ins style="font-weight: bold; text-decoration: none;"></ins></div></td></tr>
<tr><td class='diff-marker'> </td><td style="background-color: #f8f9fa; color: #222; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><div>[[HPC2N]] has a site license for academic users.</div></td><td class='diff-marker'> </td><td style="background-color: #f8f9fa; color: #222; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><div>[[HPC2N]] has a site license for academic users.</div></td></tr>
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Åke Sandgren (HPC2N)
https://snicdocs.nsc.liu.se/w/index.php?title=Rosetta&diff=6190&oldid=prev
Åke Sandgren (HPC2N) at 17:14, 2 December 2015
2015-12-02T17:14:49Z
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<td colspan="2" style="background-color: #fff; color: #222; text-align: center;">Revision as of 17:14, 2 December 2015</td>
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<tr><td class='diff-marker'> </td><td style="background-color: #f8f9fa; color: #222; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><div>[[NSC]] has a site license for academic users.</div></td><td class='diff-marker'> </td><td style="background-color: #f8f9fa; color: #222; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><div>[[NSC]] has a site license for academic users.</div></td></tr>
<tr><td colspan="2"> </td><td class='diff-marker'>+</td><td style="color: #222; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #a3d3ff; vertical-align: top; white-space: pre-wrap;"><div><ins style="font-weight: bold; text-decoration: none;">[[HPC2N]] has a site license for academic users.</ins></div></td></tr>
<tr><td class='diff-marker'> </td><td style="background-color: #f8f9fa; color: #222; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"></td><td class='diff-marker'> </td><td style="background-color: #f8f9fa; color: #222; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"></td></tr>
<tr><td class='diff-marker'> </td><td style="background-color: #f8f9fa; color: #222; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><div>== Experts ==</div></td><td class='diff-marker'> </td><td style="background-color: #f8f9fa; color: #222; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><div>== Experts ==</div></td></tr>
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Åke Sandgren (HPC2N)
https://snicdocs.nsc.liu.se/w/index.php?title=Rosetta&diff=3851&oldid=prev
Joel Hedlund (NSC): /* License */
2012-04-20T08:50:11Z
<p><span dir="auto"><span class="autocomment">License</span></span></p>
<table class="diff diff-contentalign-left" data-mw="interface">
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<td colspan="2" style="background-color: #fff; color: #222; text-align: center;">Revision as of 08:50, 20 April 2012</td>
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<tr><td class='diff-marker'> </td><td style="background-color: #f8f9fa; color: #222; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><div>{{show license}}</div></td><td class='diff-marker'> </td><td style="background-color: #f8f9fa; color: #222; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><div>{{show license}}</div></td></tr>
<tr><td colspan="2"> </td><td class='diff-marker'>+</td><td style="color: #222; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #a3d3ff; vertical-align: top; white-space: pre-wrap;"><div><ins style="font-weight: bold; text-decoration: none;"></ins></div></td></tr>
<tr><td colspan="2"> </td><td class='diff-marker'>+</td><td style="color: #222; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #a3d3ff; vertical-align: top; white-space: pre-wrap;"><div><ins style="font-weight: bold; text-decoration: none;">[[NSC]] has a site license for academic users.</ins></div></td></tr>
<tr><td class='diff-marker'> </td><td style="background-color: #f8f9fa; color: #222; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"></td><td class='diff-marker'> </td><td style="background-color: #f8f9fa; color: #222; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"></td></tr>
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Joel Hedlund (NSC)
https://snicdocs.nsc.liu.se/w/index.php?title=Rosetta&diff=3850&oldid=prev
Joel Hedlund (NSC): Created page with "{{software info |description=protein structure prediction suite |license=site license |fields=Bioinformatics }} [http://www.rosettacommons.org/ {{PAGENAME}}] is a {{#show: {{PAGE..."
2012-04-20T08:49:01Z
<p>Created page with "{{software info |description=protein structure prediction suite |license=site license |fields=Bioinformatics }} [http://www.rosettacommons.org/ {{PAGENAME}}] is a {{#show: {{PAGE..."</p>
<p><b>New page</b></p><div>{{software info<br />
|description=protein structure prediction suite<br />
|license=site license<br />
|fields=Bioinformatics<br />
}}<br />
[http://www.rosettacommons.org/ {{PAGENAME}}] is a {{#show: {{PAGENAME}} |?description}} that can also be used for structure design and to investigate protein-protein interactions.<br />
<br />
== Availability ==<br />
{{list resources for software}}<br />
<br />
== Compilation and installation ==<br />
Rosetta 3.4 does not seem to compile with Intel 12 compilers, though it is possible to use Intel 11 compilers by explicitly setting the compiler path in rosetta_source/tools/build/user.settings and then building with the cxx=icc option to scons. Rosetta does not seem to support setting an install prefix at build time, but assumes that the source files will be copied to the install location and built in-place, but this isn't actually needed, as you can copy executables and libraries to any directory after the build completes. Note however that Rosetta rpaths its own shared libraries inside the build tree, so removing the build tree will break the program if you don't change the rpaths, using for example chrpath. <br />
<br />
Rosetta also likes to name its executables after the operating system, compiler and mode of compilation, and also indicates "default" builds using name mangling (e.g: vip.default.linuxiccrelease). This is purely cosmetic and can be changed (e.g. to just vip). It is however worth bearing in mind that some third-party applications (like [[CS-Rosetta]]) will make assumptions on your build choices and only look for executables named *.linuxgccrelease (note not default), and their configurations will thus have to be modified accordingly. <br />
<br />
Rosetta also needs a database directory tree, which you can point out using the $ROSETTA3_DB environment variable so that users do not have to use the -database option at each launch of a Rosetta executable.<br />
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== License ==<br />
{{show license}}<br />
<br />
== Experts ==<br />
{{list experts}}<br />
<br />
== Links ==<br />
* [http://www.rosettacommons.org/ Official website]</div>
Joel Hedlund (NSC)