PconsC for Fido

From SNIC Documentation
Revision as of 07:45, 19 September 2013 by Joel Hedlund (NSC) (talk | contribs)
Jump to: navigation, search
Name PconsC for Fido
Description Web hosting for PconsC
Research project SeRC: Combination of direct information methods and alignments improves contact prediction.
Project financing   SeRC
Is active yes
Start date 2013-09-07
End date

Hosting the PconsC code by Marcin Skwark et al on the Fido system for providing PconsC predictions as a service.

Members

Orderers:

  • Marcin Skwark (SciLifeLab KI)
  • Arne Elofsson (SciLifeLab KI)

Testers:

  • Robert Pilstål (LiU)
  • Björn Wallner (LiU)

Features

PredictAll
Contact prediction from primary sequence, via multiple iterative database homology search.
Caching results from successful runs.
PconsC takes in the order of hours to run, but output files are small and can be cached to disk at little cost, for instant output when re-running predictions. This is useful to avoid overload e.g. should a course decides to use the service as an example.

Progress

2013-09-14
First draft for the service opened for requestors on the production system for comments.