https://snicdocs.nsc.liu.se/w/index.php?title=Patchwork&feed=atom&action=history
Patchwork - Revision history
2024-03-28T18:57:34Z
Revision history for this page on the wiki
MediaWiki 1.31.10
https://snicdocs.nsc.liu.se/w/index.php?title=Patchwork&diff=7314&oldid=prev
Torben Rasmussen (NSC) at 08:03, 28 February 2020
2020-02-28T08:03:16Z
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<td colspan="2" style="background-color: #fff; color: #222; text-align: center;">Revision as of 08:03, 28 February 2020</td>
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<tr><td class='diff-marker'>−</td><td style="color: #222; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #ffe49c; vertical-align: top; white-space: pre-wrap;"><div>|fields=Bioinformatics<del class="diffchange diffchange-inline">, cancer</del></div></td><td class='diff-marker'>+</td><td style="color: #222; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #a3d3ff; vertical-align: top; white-space: pre-wrap;"><div>|fields=Bioinformatics<ins class="diffchange diffchange-inline">; Cancer</ins></div></td></tr>
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Torben Rasmussen (NSC)
https://snicdocs.nsc.liu.se/w/index.php?title=Patchwork&diff=5449&oldid=prev
Sebastian DiLorenzo (UPPMAX): Initial adding of project
2013-09-27T14:52:16Z
<p>Initial adding of project</p>
<p><b>New page</b></p><div>{{project info<br />
|description=Patchwork: Bioinformatic tool for allele-specific copynumber analysis of tumor samples<br />
|fields=Bioinformatics, cancer<br />
|financing=SNIC/SciLifeLab<br />
|active=yes<br />
|start date=2012-06-01<br />
|end date=2013-10-01<br />
}}<br />
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Patchwork is a bioinformatic tool for analyzing and visualizing allele-specific copy numbers and loss-of-heterozygosity in cancer genomes. The data input is in the format of whole-genome sequencing data which enables characterization of genomic alterations ranging in size from point mutations to entire chromosomes. High quality results are obtained even if samples have low coverage, ~4x, low tumor cell content or are aneuploid. <br />
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Patchwork is available for two data types. Patchwork takes BAM files as input whereas PatchworkCG takes input from CompleteGenomics files. <br />
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http://patchwork.r-forge.r-project.org/<br />
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Publication: http://genomebiology.com/2013/14/3/R24/abstract<br />
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== Members ==<br />
{{#ask: [[Category:Person]] [[project::{{PAGENAME}}]]<br />
|?centre<br />
|?role<br />
|?field<br />
}}</div>
Sebastian DiLorenzo (UPPMAX)