Difference between revisions of "Kalkyl"

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(Kalkyl has been decommissioned)
 
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{{resource info
 
{{resource info
|description=a cluster resource of about 21 TFLOPS
+
|description=cluster resource of about 21 TFLOPS
 +
|resource type=compute
 
|centre=UPPMAX
 
|centre=UPPMAX
|software=Gaussian, HMMER
+
|is active=no
 +
|start date=2010-03-01
 +
|end date=2014-01-01
 +
|software=Gaussian,GAMESS,ABySS,ab_wtp,ANFO,ANNOVAR,BclConverter,BEDTools,BioPerl,BioPython,bioscope,BLAST,BLAT,Bowtie,BWA,CASAVA,Concaterpillar,Cufflinks,EMBOSS,EMMAX,FastQC,FASTX,FreeBayes,GARLI,GATK,GCTA,GenomeTools,HMMER,Maq,matrix2png,MIRA,MOSAIK,mpiblast,MrBayes,MUMmer,Picard,RAxML,Ray,SAMtools,SOAPdenovo,SolexaQA,SplitSeek,Staden,Tophat,UNAFold,Velvet
 
}}
 
}}
  
 
== Available software ==
 
== Available software ==
 
{{list software at resource}}
 
{{list software at resource}}
 
== Links ==
 
* [http://www.uppmax.uu.se/systems/kalkyl Description of Kalkyl at UPPMAX web page]
 

Latest revision as of 12:56, 6 February 2014

Name Kalkyl
Description cluster resource of about 21 TFLOPS
Resource type compute
Centre UPPMAX
Is active no
Start date 2010-03-01
End date   2014-01-01

Available software

SoftwareFieldLicenseDescription
7.5.D Guidelines for D7.5.pdf
ABINITComputational chemistry
Computational materials science
Freedensity-functional theory code
ABINIT
ABINIT
ABINIT
ABINIT
ABINIT
ABySSBioinformaticsFreeA parallel assembler for short read sequence data
ABySS
ABySS
ABySS
ABySS
ABySS
ACMLSystem tool
Numerical library
Requires licenseefficient mathematics library
ACML
ACML
ACML
ACML
ACML
AE FTE
AE financing
ANFOBioinformaticsFreeA parallel assembler for short read sequence data
ANFO
ANFO
ANFO
ANFO
ANFO
ANNOVARBioinformaticsFreeFunctional annotation of genetic variants from high-throughput sequencing data
ANNOVAR
ANNOVAR
ANNOVAR
ANNOVAR
ANNOVAR
ANSYSComputational fluid dynamicsRequires licenselarge modeling suite
ANSYS workshop: Using HPC and Reduced Order Models for ANSYS simulations (April 2020)Scientific computingANSYS workshop: Using HPC and Reduced Order Models for ANSYS simulations
ANSYS
ANSYS
ANSYS
ANSYS
ANSYS
ARCclient
ARM HPC hands on workshop (Feb 2020)Scientific computingIntroduction to PDC
ASEComputational materials scienceFreeframework for setting up and analyzing atomistic simulations
ASE
ASE
ASE
ASE
Ab wtpBioinformaticsFreeAlignment tool for SOLiD transcript reads
Ab wtp
Ab wtp
... further results