Difference between revisions of "IRODS iCommands installation on Ubuntu 16.04"

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(Configure the iRODS environment)
(Swestore iRODS is decomissioned)
(Tag: New redirect)
 
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#REDIRECT[[Swestore iRODS is decommissioned]]
== Install the public key and add the repository ==
 
vitlacil@host:~$ wget -qO - https://packages.irods.org/irods-signing-key.asc | sudo apt-key add -
 
[sudo] password for vitlacil: *************************
 
OK
 
vitlacil@host:~$ wget -qO - https://packages.irods.org/irods-signing-key.asc | sudo apt-key add -
 
OK
 
vitlacil@host:~$ echo "deb [arch=amd64] https://packages.irods.org/apt/ $(lsb_release -sc) main" | sudo tee /etc/apt/sources.list.d/renci-irods.list
 
deb [arch=amd64] https://packages.irods.org/apt/ xenial main
 
vitlacil@host:~$ sudo apt-get update
 
Hit:1 http://se.archive.ubuntu.com/ubuntu xenial InRelease
 
Hit:2 http://se.archive.ubuntu.com/ubuntu xenial-updates InRelease           
 
Hit:3 http://se.archive.ubuntu.com/ubuntu xenial-backports InRelease         
 
Get:4 http://security.ubuntu.com/ubuntu xenial-security InRelease [109 kB]   
 
Get:5 https://packages.irods.org/apt xenial InRelease [3 499 B]               
 
Get:6 http://security.ubuntu.com/ubuntu xenial-security/main amd64 DEP-11 Metadata [76,7 kB]
 
Get:7 https://packages.irods.org/apt xenial/main amd64 Packages [31,8 kB]
 
Get:8 http://security.ubuntu.com/ubuntu xenial-security/universe amd64 DEP-11 Metadata [124 kB]
 
Get:9 http://security.ubuntu.com/ubuntu xenial-security/multiverse amd64 DEP-11 Metadata [2 464 B]
 
Fetched 348 kB in 1s (306 kB/s)                                           
 
Reading package lists... Done
 
 
 
== List available packages ==
 
vitlacil@host:~$ apt-cache search irods
 
php-irods-prods - PHP client API for iRODS
 
irods-auth-plugin-gsi - The integrated Rule-Oriented Data System
 
irods-auth-plugin-krb - The integrated Rule-Oriented Data System
 
irods-database-plugin-mysql - The integrated Rule-Oriented Data System
 
irods-database-plugin-oracle - The integrated Rule-Oriented Data System
 
irods-database-plugin-postgres - The integrated Rule-Oriented Data System
 
irods-dev - The integrated Rule-Oriented Data System
 
irods-externals-autoconf5ad3567c-0 - iRODS Build Dependency
 
irods-externals-avro1.7.7-0 - iRODS Build Dependency
 
irods-externals-avro1.8.2-0 - iRODS Build Dependency
 
irods-externals-avro1.9.0-0 - iRODS Build Dependency
 
irods-externals-aws-sdk-cpp1.4.89-0 - iRODS Build Dependency
 
irods-externals-aws-sdk-cpp1.4.89-1 - iRODS Build Dependency
 
irods-externals-boost1.60.0-0 - iRODS Build Dependency
 
irods-externals-boost1.67.0-0 - iRODS Build Dependency
 
irods-externals-catch22.3.0-0 - iRODS Build Dependency
 
irods-externals-clang3.8-0 - iRODS Build Dependency
 
irods-externals-clang6.0-0 - iRODS Build Dependency
 
irods-externals-clang-runtime3.8-0 - iRODS Build Dependency
 
irods-externals-clang-runtime6.0-0 - iRODS Build Dependency
 
irods-externals-cmake3.5.2-0 - iRODS Build Dependency
 
irods-externals-cmake3.11.4-0 - iRODS Build Dependency
 
irods-externals-cppzmq4.1-0 - iRODS Build Dependency
 
irods-externals-cppzmq4.2.3-0 - iRODS Build Dependency
 
irods-externals-cpr1.3.0-0 - iRODS Build Dependency
 
irods-externals-cpr1.3.0-1 - iRODS Build Dependency
 
irods-externals-elasticlient0.1.0-0 - iRODS Build Dependency
 
irods-externals-elasticlient0.1.0-1 - iRODS Build Dependency
 
irods-externals-epm4.2-0 - iRODS Build Dependency
 
irods-externals-fmt6.1.2-0 - iRODS Build Dependency
 
irods-externals-fmt6.1.2-1 - iRODS Build Dependency
 
irods-externals-imagemagick7.0.3-0 - iRODS Build Dependency
 
irods-externals-imagemagick7.0.8-0 - iRODS Build Dependency
 
irods-externals-jansson2.7-0 - iRODS Build Dependency
 
irods-externals-json3.0.1-0 - iRODS Build Dependency
 
irods-externals-json3.1.2-0 - iRODS Build Dependency
 
irods-externals-json3.7.3-0 - iRODS Build Dependency
 
irods-externals-libarchive3.1.2-0 - iRODS Build Dependency
 
irods-externals-libarchive3.3.2-0 - iRODS Build Dependency
 
irods-externals-libarchive3.3.2-1 - iRODS Build Dependency
 
irods-externals-libs3a30e55e8-0 - iRODS Build Dependency
 
irods-externals-libs3a30e55e8-1 - iRODS Build Dependency
 
irods-externals-libs359b62371-0 - iRODS Build Dependency
 
irods-externals-mungefs1.0.2-0 - iRODS Build Dependency
 
irods-externals-mungefs1.0.3-0 - iRODS Build Dependency
 
irods-externals-nanodbc2.13.0-0 - iRODS Build Dependency
 
irods-externals-qpid-with-proton0.34-0 - iRODS Build Dependency
 
irods-externals-qpid-with-proton0.34-1 - iRODS Build Dependency
 
irods-externals-redis4.0.8-0 - iRODS Build Dependency
 
irods-externals-redis4.0.10-0 - iRODS Build Dependency
 
irods-externals-spdlog0.17.0-0 - iRODS Build Dependency
 
irods-externals-spdlog1.5.0-0 - iRODS Build Dependency
 
irods-externals-spdlog1.5.0-1 - iRODS Build Dependency
 
irods-externals-zeromq4-14.1.3-0 - iRODS Build Dependency
 
irods-externals-zeromq4-14.1.6-0 - iRODS Build Dependency
 
irods-icommands - The integrated Rule-Oriented Data System
 
irods-microservice-plugins-curl - The integrated Rule-Oriented Data System
 
irods-resource-plugin-s3 - The integrated Rule-Oriented Data System
 
irods-rule-engine-plugin-apply-access-time - The integrated Rule-Oriented Data System
 
irods-rule-engine-plugin-audit-amqp - The integrated Rule-Oriented Data System
 
irods-rule-engine-plugin-data-movement - The integrated Rule-Oriented Data System
 
irods-rule-engine-plugin-data-replication - The integrated Rule-Oriented Data System
 
irods-rule-engine-plugin-data-verification - The integrated Rule-Oriented Data System
 
irods-rule-engine-plugin-python - The integrated Rule-Oriented Data System
 
irods-rule-engine-plugin-storage-tiering - The integrated Rule-Oriented Data System
 
irods-rule-engine-plugin-tiered-storage - The integrated Rule-Oriented Data System
 
irods-rule-engine-plugin-unified-storage-tiering - The integrated Rule-Oriented Data System
 
irods-rule-engine-plugin-update-collection-mtime - The integrated Rule-Oriented Data System
 
irods-runtime - The integrated Rule-Oriented Data System
 
irods-server - The integrated Rule-Oriented Data System
 
vitlacil@host:~$
 
 
 
== Install iRODS iCommands ==
 
vitlacil@host:~$ sudo apt install irods-icommands
 
Reading package lists... Done
 
Building dependency tree     
 
Reading state information... Done
 
The following additional packages will be installed:
 
  irods-externals-avro1.7.7-0 irods-externals-boost1.60.0-0
 
  irods-externals-clang-runtime3.8-0 irods-externals-jansson2.7-0
 
  irods-externals-libarchive3.3.2-0 irods-externals-zeromq4-14.1.3-0
 
  irods-runtime python-cffi-backend python-chardet python-cryptography
 
  python-enum34 python-idna python-ipaddress python-ndg-httpsclient
 
  python-openssl python-pkg-resources python-psutil python-pyasn1
 
  python-requests python-six python-urllib3
 
Suggested packages:
 
  python-cryptography-doc python-cryptography-vectors python-enum34-doc
 
  python-openssl-doc python-openssl-dbg python-setuptools python-psutil-doc
 
  python-ntlm
 
The following NEW packages will be installed:
 
  irods-externals-avro1.7.7-0 irods-externals-boost1.60.0-0
 
  irods-externals-clang-runtime3.8-0 irods-externals-jansson2.7-0
 
  irods-externals-libarchive3.3.2-0 irods-externals-zeromq4-14.1.3-0
 
  irods-icommands irods-runtime python-cffi-backend python-chardet
 
  python-cryptography python-enum34 python-idna python-ipaddress
 
  python-ndg-httpsclient python-openssl python-pkg-resources python-psutil
 
  python-pyasn1 python-requests python-six python-urllib3
 
0 upgraded, 22 newly installed, 0 to remove and 0 not upgraded.
 
Need to get 25,9 MB of archives.
 
After this operation, 199 MB of additional disk space will be used.
 
Do you want to continue? [Y/n] y
 
Get:1 http://se.archive.ubuntu.com/ubuntu xenial/main amd64 python-cffi-backend amd64 1.5.2-1ubuntu1 [58,1 kB]
 
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Get:9 http://se.archive.ubuntu.com/ubuntu xenial-updates/main amd64 python-cryptography amd64 1.2.3-1ubuntu0.2 [199 kB]
 
Get:10 http://se.archive.ubuntu.com/ubuntu xenial-updates/main amd64 python-openssl all 0.15.1-2ubuntu0.2 [84,9 kB]
 
Get:11 http://se.archive.ubuntu.com/ubuntu xenial/main amd64 python-ndg-httpsclient all 0.4.0-3 [25,1 kB]
 
Get:12 http://se.archive.ubuntu.com/ubuntu xenial-updates/main amd64 python-psutil amd64 3.4.2-1ubuntu0.1 [55,4 kB]
 
Get:13 http://se.archive.ubuntu.com/ubuntu xenial-updates/main amd64 python-urllib3 all 1.13.1-2ubuntu0.16.04.3 [58,4 kB]
 
Get:14 http://se.archive.ubuntu.com/ubuntu xenial-updates/main amd64 python-requests all 2.9.1-3ubuntu0.1 [55,9 kB]
 
Get:15 https://packages.irods.org/apt xenial/main amd64 irods-externals-avro1.7.7-0 amd64 1.0~xenial [1 566 kB]
 
Get:16 https://packages.irods.org/apt xenial/main amd64 irods-externals-boost1.60.0-0 amd64 1.0~xenial [13,8 MB]
 
Get:17 https://packages.irods.org/apt xenial/main amd64 irods-externals-clang-runtime3.8-0 amd64 1.0~xenial [374 kB]
 
Get:18 https://packages.irods.org/apt xenial/main amd64 irods-externals-jansson2.7-0 amd64 1.0~xenial [162 kB]
 
Get:19 https://packages.irods.org/apt xenial/main amd64 irods-externals-libarchive3.3.2-0 amd64 1.0~xenial [1 732 kB]
 
Get:20 https://packages.irods.org/apt xenial/main amd64 irods-externals-zeromq4-14.1.3-0 amd64 1.0~xenial [568 kB]
 
Get:21 https://packages.irods.org/apt xenial/main amd64 irods-runtime amd64 4.2.7 [5 854 kB]
 
Get:22 https://packages.irods.org/apt xenial/main amd64 irods-icommands amd64 4.2.7 [989 kB]
 
Fetched 25,9 MB in 17s (1 476 kB/s)                                           
 
Selecting previously unselected package python-cffi-backend.
 
(Reading database ... 212721 files and directories currently installed.)
 
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Processing triggers for man-db (2.7.5-1) ...
 
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Processing 1 added doc-base file...
 
Setting up python-cffi-backend (1.5.2-1ubuntu1) ...
 
Setting up python-pkg-resources (20.7.0-1) ...
 
Setting up python-chardet (2.3.0-2) ...
 
Setting up python-enum34 (1.1.2-1) ...
 
Setting up python-idna (2.0-3) ...
 
Setting up python-ipaddress (1.0.16-1) ...
 
Setting up python-pyasn1 (0.1.9-1) ...
 
Setting up python-six (1.10.0-3) ...
 
Setting up python-cryptography (1.2.3-1ubuntu0.2) ...
 
Setting up python-openssl (0.15.1-2ubuntu0.2) ...
 
Setting up python-ndg-httpsclient (0.4.0-3) ...
 
Setting up python-psutil (3.4.2-1ubuntu0.1) ...
 
Setting up python-urllib3 (1.13.1-2ubuntu0.16.04.3) ...
 
Setting up python-requests (2.9.1-3ubuntu0.1) ...
 
Setting up irods-externals-avro1.7.7-0 (1.0~xenial) ...
 
Setting up irods-externals-boost1.60.0-0 (1.0~xenial) ...
 
Setting up irods-externals-clang-runtime3.8-0 (1.0~xenial) ...
 
Setting up irods-externals-jansson2.7-0 (1.0~xenial) ...
 
Setting up irods-externals-libarchive3.3.2-0 (1.0~xenial) ...
 
Setting up irods-externals-zeromq4-14.1.3-0 (1.0~xenial) ...
 
Setting up irods-runtime (4.2.7) ...
 
Setting up irods-icommands (4.2.7) ...
 
vitlacil@host:~$
 
 
== Configure the iRODS environment ==
 
 
 
NOTE: Create your own configuration file !!
 
 
vitlacil@host:~$ cd /home/vitlacil/
 
vitlacil@host:~$ mkdir .irods
 
vitlacil@host:~$ cat /home/vitlacil/.irods/irods_environment.json
 
{
 
  "irods_host": "irods-login.swestore.se",
 
  "irods_port": 2432,
 
  "irods_default_resource": "pdc-gpfs",
 
  "irods_home": "/snic.se/home/s_dejvi",
 
  "irods_cwd": "/snic.se/home/s_dejvi",
 
  "irods_user_name": "s_dejvi",
 
  "irods_zone_name": "snic.se",
 
  "irods_client_server_negotiation": "request_server_negotiation",
 
  "irods_client_server_policy": "CS_NEG_REFUSE",
 
  "irods_default_hash_scheme": "SHA256",
 
  "irods_encryption_algorithm": "AES-256-CBC",
 
  "irods_encryption_key_size": 32,
 
  "irods_encryption_num_hash_rounds": 16,
 
  "irods_encryption_salt_size": 8,
 
  "irods_match_hash_policy": "compatible",
 
  "irods_authentication_scheme" : "PAM"
 
}
 
 
 
== Authenticate and test iRODS iCommands client ==
 
vitlacil@host:~$ iinit
 
Enter your current PAM password:
 
vitlacil@host:~$ ils
 
/snic.se/home/s_dejvi:
 
  .DS_Store
 
  ._.DS_Store
 
  SISO.Certificate.pdf
 
  project_role_descriptions.docx
 
  worst-day-fosdem-2014.pdf
 
  C- /snic.se/home/s_dejvi/0 TiddlyWiki
 
  C- /snic.se/home/s_dejvi/0 reading
 
  C- /snic.se/home/s_dejvi/EOSC
 
  C- /snic.se/home/s_dejvi/EUDAT
 
  C- /snic.se/home/s_dejvi/FAIR
 
  C- /snic.se/home/s_dejvi/FitSM
 
  .....
 
vitlacil@host:~$
 

Latest revision as of 10:13, 8 February 2023